Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_P15
(845 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06) 33 0.39
SB_5795| Best HMM Match : RasGEF (HMM E-Value=5.3e-06) 33 0.39
SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36) 30 2.7
SB_56415| Best HMM Match : Extensin_2 (HMM E-Value=0.99) 29 3.6
SB_48377| Best HMM Match : Spc97_Spc98 (HMM E-Value=8.3e-26) 29 4.7
SB_43260| Best HMM Match : Gemini_mov (HMM E-Value=0.94) 29 6.3
SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01) 29 6.3
SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_33539| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54) 28 8.3
SB_30471| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
Length = 739
Score = 32.7 bits (71), Expect = 0.39
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -1
Query: 374 DMWADAGLHVILSDAADKSVRDGESRVYPAVRVHN-GERD-FINDAVNRVTDVLSRRDEK 201
D W A + D + G A R GE D IND N++ +++S R+
Sbjct: 494 DEWETASDVSSDEEPRDSIISYGSPEAETAQREQGTGENDDTINDERNKINEIISNRNPG 553
Query: 200 RERDQDNHGGFV 165
+ NHGG+V
Sbjct: 554 KRVQVTNHGGYV 565
>SB_5795| Best HMM Match : RasGEF (HMM E-Value=5.3e-06)
Length = 155
Score = 32.7 bits (71), Expect = 0.39
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 467 VAGNIKQDCLKE*RKTNPLIIFVIFNFVLS 378
V G + +C+KE R T+PL++FV N +S
Sbjct: 115 VEGKVHSECIKECRSTSPLLLFVTENATVS 144
>SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)
Length = 972
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +3
Query: 48 YSRPRPTRRAPAMFDVFGSVKGLLKLDSVCIDNNVFRLHYKATVIILIAFSLLVTSRQYI 227
++ P PT R+P + S+ GL+ + + + R ++ T A++L + ++++
Sbjct: 648 HTPPPPTDRSPVYSHLSTSLTGLITIRAFQAEQAFIRSYHAYTDFHTGAYALNLGIQRWL 707
Query: 228 GDPIDCI-VDEIPLAVMDTYCWIYSTFTIPNRLIG 329
G +D I LAV + + + FTI ++G
Sbjct: 708 GIRLDIISALFFALAVFTSLLTVEAGFTISASVVG 742
>SB_56415| Best HMM Match : Extensin_2 (HMM E-Value=0.99)
Length = 412
Score = 29.5 bits (63), Expect = 3.6
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +1
Query: 400 TNIISGFVLRYSFKQSCFM--FPATCGKRGKEAASRCWSWILTVPSLKTSASRVVKSYLS 573
T+ +S FV+ YS S F+ + +T + +S +++ S + R V YLS
Sbjct: 139 TSTLSRFVVVYSSTLSRFVVVYSSTLSRFVVVYSSTLSRFVVVYSS---TLYRFVVVYLS 195
Query: 574 TISTRTCTLKTFTLSDSLYVKFSTLST*WVKYSSWTS 684
T+S R + T TLS + V STLS V YSS S
Sbjct: 196 TLS-RFVVVYTSTLSRFVVVYSSTLSRFVVVYSSTLS 231
Score = 28.3 bits (60), Expect = 8.3
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +1
Query: 400 TNIISGFVLRYSFKQSCFM--FPATCGKRGKEAASRCWSWILTVPSLKTSASRVVKSYLS 573
T+ +S FV+ Y+ S F+ + +T + S +++ S + SR V Y S
Sbjct: 73 TSTLSRFVVVYTSTLSRFVVVYSSTLSRFVVVYTSTLSRFVVVYTS---TLSRFVVVYTS 129
Query: 574 TISTRTCTLKTFTLSDSLYVKFSTLST*WVKYSSWTS 684
T+S R + T TLS + V STLS V YSS S
Sbjct: 130 TLS-RFVVVYTSTLSRFVVVYSSTLSRFVVVYSSTLS 165
>SB_48377| Best HMM Match : Spc97_Spc98 (HMM E-Value=8.3e-26)
Length = 495
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 620 ILYM*SSQLYQRSGSNILHGLLFGRRISTYGSDVVSFTEMEPEERVDPM 766
IL+M LYQ+ + +LHGLL R S V + E E +R + M
Sbjct: 152 ILFMCHGVLYQQLSAWLLHGLLIDRHDEFLISKVSAADENESIKRTESM 200
>SB_43260| Best HMM Match : Gemini_mov (HMM E-Value=0.94)
Length = 294
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 15 PHPTRGRSARPYSRPR 62
PH T GR RP+SRPR
Sbjct: 172 PHATEGRCWRPHSRPR 187
>SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 804
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 319 DLSAASERITCNPASAHMSKDKTKLNITNIISGFVLRYSFK 441
++S ++ + +A S+D+ L ITNIIS F+L SF+
Sbjct: 457 EVSKLERKLMKDVGTALHSRDEFSLLITNIISSFLLGKSFE 497
>SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01)
Length = 1062
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 15 PHPTRGRSARPYSRPR 62
PH T GR RP+SRPR
Sbjct: 892 PHATEGRRWRPHSRPR 907
>SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +3
Query: 204 LVTSRQYIGDPIDCIVDEIPLAVMDTYCWIYSTFTIPNRLIGRVGKDYVQPGVGPHVEGQ 383
++T Q + DP + I+D+ + T I T +++ G+D + P +
Sbjct: 95 IITGNQVLSDPGEDIIDDYHRRSLATPARISLTIITGKKVLSDSGEDLIDILSDPGEDII 154
Query: 384 DEVKY-HKYYQWVCFALFFQAILFY 455
D+ + Y +CF F ++ Y
Sbjct: 155 DDYHWSFDVYMMMCFVFVFGCLVEY 179
>SB_33539| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 398 IFNFVLSFDMWADAGLHVILSDAADKSVRDGESRVYPAVRVHNGERDFIN 249
+FN + +W D S A+KS+R ES Y ++VH +N
Sbjct: 18 LFNNLNDTPLWKDRSFATTFSYVANKSIRKQES--YGLIKVHKKTSKILN 65
>SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)
Length = 710
Score = 28.3 bits (60), Expect = 8.3
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +1
Query: 400 TNIISGFVLRYSFKQSCFM--FPATCGKRGKEAASRCWSWILTVPSLKTSASRVVKSYLS 573
++ +S FV+ YS S F+ + +T + +S +++ S + SR V Y S
Sbjct: 617 SSTLSRFVVVYSSTLSRFVVVYSSTLSRFVVVYSSTLSRFVVVYSS---TLSRFVVVYTS 673
Query: 574 TISTRTCTLKTFTLSDSLYVKFSTLST*WVKYSSWTS 684
T+S R + T TLS + V STLS V YSS S
Sbjct: 674 TLS-RFVVVYTSTLSRFVVVYSSTLSRFVVVYSSTLS 709
>SB_30471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 177 VIILIAFSLLVTSRQYIGDPIDCIVDEIPLAVMDTYCWIYST 302
V+I+ +LL+T Q P++ + +A++DT ++ T
Sbjct: 4 VLIITLLALLITKLQVTASPVEIAHGRVHMAILDTQNFVCQT 45
>SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 495 IKMLVLDL-NCPIVEDEC--KSGRKKLLVDYFHTNLHTQNFYAFRFFICEVLNFINVVG 662
++ LV D+ +C + + C + RK+L VD+ H N H A ++ E + ++G
Sbjct: 609 LQFLVSDIQSCAVTNNMCLNPAKRKELSVDFLHYNSHVCQTIATGGYVIERVKSFKLLG 667
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,060,597
Number of Sequences: 59808
Number of extensions: 590129
Number of successful extensions: 1684
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1682
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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