Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P15
         (845 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55270.1 68416.m06138 MAP kinase phosphatase (MKP1) identical...    32   0.55 
At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) conta...    31   1.3  
At3g19830.1 68416.m02512 C2 domain-containing protein low simila...    29   2.9  
At5g42450.1 68418.m05168 pentatricopeptide (PPR) repeat-containi...    29   3.9  
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)...    29   3.9  
At2g37290.1 68415.m04574 RabGAP/TBC domain-containing protein lo...    28   6.8  
At3g46550.1 68416.m05053 fasciclin-like arabinogalactan family p...    28   9.0  

>At3g55270.1 68416.m06138 MAP kinase phosphatase (MKP1) identical to
           MAP kinase phosphatase (MKP1) GI:13540262 from
           [Arabidopsis thaliana]
          Length = 534

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +3

Query: 3   LDSIPHPTRGRSARPYSRPRPTRRA-PAMFDVFGSVKGLLKLDSVCIDNN---VFRLH 164
           L S   P   R    + +P P R+A P++ +  GS+KG LKL  +   N     F LH
Sbjct: 303 LPSQTSPKESRGVNTFLQPSPNRKASPSLAERRGSLKGSLKLPGLADSNRGTPAFTLH 360


>At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) contains
           Pfam profile PF00033: Cytochrome b(N-terminal)/b6/petB;
           ontains Pfam profile PF00032: Cytochrome
           b(C-terminal)/b6/petD; 99% identical to  apocytochrome B
           (GI:6851014), cytochrome b (GI:402962), and Cytochrome b
           (Swiss-Prot:P42792) [Arabidopsis thaliana]
          Length = 393

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
 Frame = +3

Query: 360 VGPHVEGQDEVKYHKYYQ------WVCFALFFQAILFYVPRYL 470
           +G H E  D++ ++ Y+       WV FA+FF   +FY P  L
Sbjct: 216 LGVHSE-MDKIAFYPYFYVKDLVGWVAFAIFFSIWIFYAPNVL 257


>At3g19830.1 68416.m02512 C2 domain-containing protein low
           similarity to GLUT4 vesicle protein [Rattus norvegicus]
           GI:4193489; contains Pfam profile PF00168: C2 domain
          Length = 666

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -1

Query: 395 FNFVLSFDMWADAGLHVILSDAADKSVRDGESRVYPAVRVHNGERDF-INDAVNRVTDVL 219
           F  VLS  + ++    ++ S+  +  V DGES V P   +   + +    DA N     L
Sbjct: 563 FMNVLSALILSEEFQGIVSSETGNNKVDDGESSVSPVPSMSGADSESRPKDAGNGDVSDL 622

Query: 218 SRRDEKRERDQDNHGGFVM 162
             ++ K +R   N+GG  +
Sbjct: 623 EVKNAKSDRGSINNGGLAL 641


>At5g42450.1 68418.m05168 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 396

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/31 (32%), Positives = 23/31 (74%)
 Frame = +1

Query: 373 SKDKTKLNITNIISGFVLRYSFKQSCFMFPA 465
           ++D   ++ITN+ISG++ ++ F+++  +F A
Sbjct: 33  TRDPNVVSITNLISGYLKKHEFEEALSLFRA 63


>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
           identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
          Length = 789

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -1

Query: 335 DAADKSVRDGESRVYPAVRVHNGERDFINDAVNRVTDVLSRRDEKRERDQD 183
           D++++ V++GE+  + A    +GE ++  +      D     DEKR+RD D
Sbjct: 23  DSSEEDVKEGEAEEHEAGEDEDGEEEYEEE-----DDDEEEEDEKRKRDAD 68


>At2g37290.1 68415.m04574 RabGAP/TBC domain-containing protein low
           similarity to Rab6 GTPase activating protein, GAPCenA
           [Homo sapiens] GI:12188746; contains Pfam profile
           PF00566: TBC domain
          Length = 882

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 302 SRVYPAVRVHNGERDFINDAVNRVTDVLSRRDEKRERDQDN 180
           SRV       NG+++ ++D  + + + LS  +E  E D+D+
Sbjct: 238 SRVKNVKSTKNGQKNIVDDHASSIKESLSSIEESGENDRDS 278


>At3g46550.1 68416.m05053 fasciclin-like arabinogalactan family
           protein similar to fasciclin-like arabinogalactan
           protein FLA8 [Arabidopsis thaliana]
           gi|10880493|gb|AAG24276
          Length = 420

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +1

Query: 250 LMKSRSPLWTRTAGYTLLSPSRTDLSAASERITCNPASAHMSKDKTKLNITNII 411
           L++++ P  T     +L+ P+  D++A SE +T  P S  +S     +N+T I+
Sbjct: 160 LLETKPPNITVLTVDSLIVPTGIDITA-SETLTPPPTSTSLSPPPAGINLTQIL 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,557,972
Number of Sequences: 28952
Number of extensions: 401557
Number of successful extensions: 1236
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)