Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_P12
(1288 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.34
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 30 0.60
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 1.1
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 1.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 7.4
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 7.4
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 7.4
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.34
Identities = 17/51 (33%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Frame = -3
Query: 1283 PPPPPPP---PXXXXXXXXXXXXXXGGXGXXXPPXXXXXXXXXXPPPPPPP 1140
PPPPPP P G PP PPPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 29.5 bits (63), Expect = 1.1
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 1284 PPPPPPPPP 1258
PPPPPPPPP
Sbjct: 775 PPPPPPPPP 783
Score = 23.8 bits (49), Expect(2) = 2.4
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 933 PPPPPPP 953
PPPPPPP
Sbjct: 775 PPPPPPP 781
Score = 22.6 bits (46), Expect(2) = 2.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 927 KXPPPPPP 950
K PPPPPP
Sbjct: 730 KSPPPPPP 737
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 30.3 bits (65), Expect = 0.60
Identities = 18/55 (32%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Frame = -2
Query: 1284 PPPPPPPPPXXXXXXXXXXXXG---GGGGXXXPXXXXXXXXXXXXP---PPPPPP 1138
PPPPPPPPP G P P PPPPPP
Sbjct: 189 PPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPP 243
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/53 (30%), Positives = 16/53 (30%), Gaps = 5/53 (9%)
Frame = -3
Query: 1283 PPPPPPPPXXXXXXXXXXXXXX-----GGXGXXXPPXXXXXXXXXXPPPPPPP 1140
PPPPPPPP PP P PPPPP
Sbjct: 190 PPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPP 242
Score = 26.2 bits (55), Expect = 9.8
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 1284 PPPPPPPPP 1258
P PPPPPPP
Sbjct: 236 PAPPPPPPP 244
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 1.1
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 1284 PPPPPPPPP 1258
PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.5 bits (63), Expect = 1.1
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2
Query: 1284 PPPPPPPPP 1258
PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/48 (29%), Positives = 14/48 (29%)
Frame = -3
Query: 1283 PPPPPPPPXXXXXXXXXXXXXXGGXGXXXPPXXXXXXXXXXPPPPPPP 1140
P PPPPPP PPPPPPP
Sbjct: 905 PTPPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPPP 952
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 7.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 1283 PPPPPPPP 1260
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 7.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 1281 PPPPPPPP 1258
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 7.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 933 PPPPPPPXXXXXKKKK 980
PPPPPPP +K K
Sbjct: 24 PPPPPPPGYVKKRKNK 39
Score = 26.6 bits (56), Expect = 7.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 934 PPPPPPPXXXXXKKKK 981
PPPPPPP +K K
Sbjct: 24 PPPPPPPGYVKKRKNK 39
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 7.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 1283 PPPPPPPP 1260
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 7.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 1281 PPPPPPPP 1258
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 7.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 1283 PPPPPPPP 1260
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 7.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 1281 PPPPPPPP 1258
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,809
Number of Sequences: 5004
Number of extensions: 34358
Number of successful extensions: 663
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 701473834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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