Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P10
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   294   9e-81
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   288   6e-79
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   138   1e-33
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...   116   5e-27
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   7.6  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   7.6  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  294 bits (722), Expect = 9e-81
 Identities = 132/215 (61%), Positives = 158/215 (73%)
 Frame = +1

Query: 106 MRECISVHVGQAGVQIGNACWELYCLGHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 285
           MRE IS+HVGQAG QIGNACWELYCL HGIQP+G M  +      D  F+TFFSETG GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 286 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 465
           +VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120

Query: 466 RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVXXX 645
           +IR++AD C+GLQGFL+FH            LL+ERL+++Y KKSKL+F++YPAPQV   
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180

Query: 646 XXXXXXXXXXXXXXXXXXDCAFMVDNEAIYDICRR 750
                             DC FMVDNE+ YDICRR
Sbjct: 181 VVEPYNSVLTTHATLDLADCTFMVDNESCYDICRR 215


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  288 bits (707), Expect = 6e-79
 Identities = 134/220 (60%), Positives = 160/220 (72%), Gaps = 5/220 (2%)
 Frame = +1

Query: 106 MRECISVHVGQAGVQIGNACWELYCLGHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 270
           MRE ISVHVGQAGVQIGNACWELYCL HGI PDG  PT+     K     +D F TFFSE
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59

Query: 271 TGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 450
           TG GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++
Sbjct: 60  TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMI 119

Query: 451 DLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAP 630
           D VL+RIR++AD C+GLQGFL+FH            LL+ERL+++YGKKS L+F++YPAP
Sbjct: 120 DSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAP 179

Query: 631 QVXXXXXXXXXXXXXXXXXXXXXDCAFMVDNEAIYDICRR 750
           QV                     DC FMVDNEA YDICRR
Sbjct: 180 QVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRR 219


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  138 bits (333), Expect = 1e-33
 Identities = 72/212 (33%), Positives = 104/212 (49%)
 Frame = +1

Query: 106 MRECISVHVGQAGVQIGNACWELYCLGHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 285
           MRE + +  GQ G Q+G A W      HG+   G      T     +  N +F+E   GK
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58

Query: 286 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 465
           +VPRAV VDLEP  +D V++G +  LF P+ +I G+  A N +A+GHYT G E+ D VLD
Sbjct: 59  YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLD 118

Query: 466 RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVXXX 645
            +R+ A+ C  LQGF + H            LL+ ++  +Y  +    F++ PAP+    
Sbjct: 119 VVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDT 178

Query: 646 XXXXXXXXXXXXXXXXXXDCAFMVDNEAIYDI 741
                             D  F +DNEA+  I
Sbjct: 179 VVEPYNATLSMHQLVENSDETFCIDNEALSSI 210


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score =  116 bits (278), Expect = 5e-27
 Identities = 62/177 (35%), Positives = 98/177 (55%), Gaps = 2/177 (1%)
 Frame = +1

Query: 109 RECISVHVGQAGVQIGNACWELYCLGHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 288
           RE I++  GQ G QIG+  W+  CL HGI PDG + +  T   G D  + FF ++   ++
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60

Query: 289 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVL 462
           +PRA+ +DLEP VV+ + + TY  L++PE ++  K    A NN+A G Y+  + I + ++
Sbjct: 61  IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119

Query: 463 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ 633
           D I + AD    L+GF + H             L+ERL+  Y KK    ++++P  Q
Sbjct: 120 DMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQ 176


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +3

Query: 204 WPDAHRQDHRGWRRFFQHFLQR 269
           W  A R D R  R  FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
 Frame = +2

Query: 464 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTPRLRF 637
           T S +  TS P+   S   SSTP      L S       +P+T++ +LN S+P T     
Sbjct: 625 TSSTALNTSTPITSSSVLNSSTPITSSSVLNSS------TPITSSTALNTSTPITSSSVL 678

Query: 638 HCRRRALQLYPHHPHNPXSTLTVLSWSTMKPSMTS 742
           +           +   P ++ +VL+ ST   S T+
Sbjct: 679 NSSTPITSSTALNTSTPITSSSVLNSSTAITSSTA 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,334,164
Number of Sequences: 5004
Number of extensions: 69626
Number of successful extensions: 225
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)