Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_P08
(858 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 27 2.6
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 27 3.4
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 27 4.5
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc... 26 6.0
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 26 7.9
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha... 26 7.9
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 26 7.9
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 26 7.9
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 7.9
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.9
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 7.9
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 27.5 bits (58), Expect = 2.6
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Frame = +1
Query: 340 QFIAKEAGALFDSSLLEDT-PSSSTNGT----ETLVPE--DNLYALMPPFETFLNVDKTA 498
+F+ ++G++ + +D P SS++ +T+ P +N Y + P + + +
Sbjct: 64 KFLQGKSGSVKVQEIPQDQLPKSSSDNAVTDRKTISPSGINNQYVIRNPKDVYYATVQAG 123
Query: 499 RLRHFFDNVKTGELI 543
+L H FD VKT EL+
Sbjct: 124 KL-HLFDPVKTSELL 137
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 27.1 bits (57), Expect = 3.4
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +1
Query: 376 SSLLEDTPSSSTNGTETLVPEDNLYALMPPFETFLNVDKTARLRHFFDNVKTGELIIGAV 555
SSL +PS ST G E + +D Y L+ +E ++ A + H F + + A
Sbjct: 1603 SSLRNVSPSESTGGYEGCIFDDQQYQLL--YELCERLEDHAAILHGFPEPPPCDTGLAAP 1660
Query: 556 INR 564
+N+
Sbjct: 1661 VNQ 1663
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 271 FAVYQSRHKHLTFQDRSKRLKLHQFIAKEAGALFDS-SLLEDTPS 402
+ +YQ H HL + + R +H+F+ A AL +S LL D+ S
Sbjct: 321 YELYQ--HSHLGYGLKEARKLIHKFVLNNAEALKESLELLGDSTS 363
>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 595 CTAGPTSRYVADINVKAFLPVGNIIQAVDKKNVSRNY 705
C+ PTS+ A I +A + V N+ V+ KN++ +Y
Sbjct: 341 CSGLPTSKTYAAITAQAPVMVHNLWSFVNGKNLTASY 377
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 397 PSSSTNGTETLVP 435
P+ STNGTET +P
Sbjct: 547 PNGSTNGTETFIP 559
>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 460 PPFETFLNVDKTARLRHFFDNVKTGELIIGAVINRTASGMMLKV 591
P F FLN+DK F+ + EL G++ R S + KV
Sbjct: 35 PSFADFLNMDKPLTADEAFELDRKVELPNGSIHKRLPSWLKTKV 78
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 100 NVTT*LRAGKKRI*MDPLLDASL 168
NV T L K+R+ +DPL+D SL
Sbjct: 271 NVVTCLDCKKERVAVDPLMDISL 293
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 214 WESERGEDDLAKIGVGALDFAVYQSRHKHLT 306
W+SE EDD+ +GV ++ K +T
Sbjct: 63 WDSEENEDDITDVGVPGSHEIMFPGHSKIVT 93
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 172 PLRTHPIKDPFKFFFSQHEVMLLRFQKNSVNVIMIEKKPIQ*SSEMATNE 23
P HPI P SQH+ + +K +V I+ K P SS A ++
Sbjct: 101 PRPMHPISHPL----SQHKTPEFKHRKRNVESILTPKNPSLFSSSNAASQ 146
>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 220
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -2
Query: 599 VQRTLSIIPDAVLLITAPMISSPVFTLSKKCLNLAVLSTFRNVSNGGIN 453
+ R++S+ P I+ P ISS L KK + + +TF + +N +N
Sbjct: 74 MNRSISVPPTN---ISVPQISSNPLNLMKKSSDNDIFTTFNDTTNDCMN 119
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 7.9
Identities = 32/144 (22%), Positives = 66/144 (45%), Gaps = 2/144 (1%)
Frame = -2
Query: 785 TPFMPQTILSVSGITSMTSQQTVSFIR*FLDTFFLSTA*IIFPTG--KKALTLMSATYLE 612
TP T L+ S T +TS V+ + L+++ I + + + S++ L
Sbjct: 3418 TPITSSTALNTS--TPITSSTVVNSSTPITSSSVLNSSTAIASSSILNSSTPITSSSVLN 3475
Query: 611 VGPAVQRTLSIIPDAVLLITAPMISSPVFTLSKKCLNLAVLSTFRNVSNGGINAYKLSSG 432
+ + ++I +V++ ++ ++S +S LN ++LS S+GG ++ S+G
Sbjct: 3476 SSTPISSS-TVITSSVVIGSSSVLSYASSIVSSVSLNSSLLS-----SSGGFSSSAFSTG 3529
Query: 431 TRVSVPLVDDEGVSSSKEESNKAP 360
+ S L + G SS + +P
Sbjct: 3530 SS-SFSLTSENGSVSSSSLVSSSP 3552
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,407,507
Number of Sequences: 5004
Number of extensions: 69351
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -