Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_P05
(849 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0592 + 30465956-30466210,30466401-30466529,30466631-304667... 31 1.5
06_03_0919 - 25939176-25940441 30 2.7
06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796 30 2.7
10_08_0663 - 19666476-19667017,19667664-19667755,19668039-196680... 29 3.5
05_01_0445 + 3547176-3547577,3548625-3549557,3550246-3550524,355... 29 4.7
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 29 4.7
07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484 29 6.2
03_06_0591 + 34936583-34936674,34937631-34937640,34937716-349378... 29 6.2
06_03_0211 - 17984029-17984129,17984234-17984302,17984502-17984739 28 8.2
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 28 8.2
>01_06_0592 +
30465956-30466210,30466401-30466529,30466631-30466760,
30466861-30466981,30467111-30467192,30467334-30467384,
30467836-30467929,30468046-30468173
Length = 329
Score = 30.7 bits (66), Expect = 1.5
Identities = 25/81 (30%), Positives = 34/81 (41%)
Frame = +1
Query: 163 KAHVQQSKNQKTNRVR*QQMTRLPSKKCSRKWNAWREPSGRATATFAGALIQESPSA*GR 342
K H + + VR +TR R W+ R SGR T A+ ESPS+ G
Sbjct: 16 KFHCSSTPTPCSGSVRRWAITRFAGAGRRRDWHRRRRTSGRGVLT-VSAVAAESPSSGG- 73
Query: 343 TAVIKLYLLNLCVVSQAPPSR 405
V + Y L V+ A P +
Sbjct: 74 -GVAEDYYAVLGVMPDATPQQ 93
>06_03_0919 - 25939176-25940441
Length = 421
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Frame = -3
Query: 592 SLQMPYPSALHLQL-LHWFDLDDPGAH-----SLPWISSNFLGV 479
SL++P P+ LQL L+W+ + PG H SL W++ N L V
Sbjct: 169 SLELP-PATAELQLRLYWYAVRPPGLHGPGVASLRWLARNGLAV 211
>06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796
Length = 478
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 114 LARHCESGALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQ 239
+A E +K P +GP A S+ K ++ DDA AV+
Sbjct: 200 MAAAAEEVDVKSEPDLDGPACAPSSSRKKKRKMVDDDAIAVE 241
>10_08_0663 -
19666476-19667017,19667664-19667755,19668039-19668095,
19668304-19668447,19668567-19668613,19668733-19668791,
19668975-19669045,19669274-19669341,19669431-19669598,
19669885-19669944,19670075-19670251
Length = 494
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +3
Query: 168 PCAAEQESKDKPSQITTDDA--SAVQEMQSEVEC-LAGTEWESNC-HFCRCSDSGVAECL 335
PC S D P+ I+ + + V + SE+ C L + + S+ CRCSD + +
Sbjct: 379 PCMLNTRSVDSPATISKAEIRRNRVAAVSSELVCPLTCSPFPSSALPTCRCSDDDPCDAI 438
Query: 336 RQDSCDQIIFTEPVRC 383
++ +P C
Sbjct: 439 ETQDGSEVQSPQPSHC 454
>05_01_0445 +
3547176-3547577,3548625-3549557,3550246-3550524,
3550624-3550752,3550813-3550869
Length = 599
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 463 ASKEHRPRPLSKQTQVLQSLWKEVPG 386
+S + PR + +++Q++WKEVPG
Sbjct: 355 SSLDWGPRACHRTHEIIQAMWKEVPG 380
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 258 ECLAGTEWESNCHFCRCSDSGVAECLRQDSCDQIIFTEPVRCQP 389
EC A + CH C + E +R+++ + I+ P+ QP
Sbjct: 117 ECFAARVYCDGCHCSPCGNKIENENIRKEAIETILLRNPLAFQP 160
>07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484
Length = 519
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = -3
Query: 289 LLSHSVPARHSTSDCISWTADASSVVI*LGLSFDSCSAAHGPSVPGLHFRAPLSQCR 119
+L + RH+ D + D LGL ++C+ HG S P L + +C+
Sbjct: 272 MLMDIIKTRHANKDVAGYGNDL------LGLMLEACAPEHGESCPQLSMDEIIDECK 322
>03_06_0591 +
34936583-34936674,34937631-34937640,34937716-34937831,
34938249-34938261,34939924-34939977,34940020-34940170,
34940619-34940647
Length = 154
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = -1
Query: 687 PKCTNTCCIHFSTS-SSAHILSLAR*CVQC---RLRHYK 583
P+C N+C + FS S H + L R C LR+YK
Sbjct: 27 PRCLNSCTVRFSLSWLGVHSMLLMRYCTNVMDHNLRYYK 65
>06_03_0211 - 17984029-17984129,17984234-17984302,17984502-17984739
Length = 135
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 606 EHIIEPEKECAPKTMWKNECNTCWCTSDGKPMCTRM 713
EHI K C P T +N N+C T + C ++
Sbjct: 21 EHIQVEAKSCCPSTTARNIYNSCRFTGASRDKCCKI 56
>04_04_1229 -
31906854-31907300,31907986-31908181,31908631-31908756,
31909962-31910329,31910680-31910835,31910968-31911168,
31911230-31911375,31911439-31911865,31912527-31912627,
31913197-31913254
Length = 741
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 128 RKWSPKMQSWHRRPMCSRARIKRQTESDNNR 220
R+ S K W+R +R R+K T SD R
Sbjct: 577 RRRSTKFDRWNRTLQAARRRVKEDTMSDTGR 607
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,344,414
Number of Sequences: 37544
Number of extensions: 589271
Number of successful extensions: 1810
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1808
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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