Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P05
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.2  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 540 STSTIPERILCPGSAQTSWELT 475
           S S +PE ILCP    T  E T
Sbjct: 433 SESCLPEEILCPHFNVTDGETT 454


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 696 VYHPKCTNTCCIHFSTSSSA 637
           ++HP C     +H +TSSS+
Sbjct: 400 LHHPNCKINRKVHHTTSSSS 419


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 587  TNAVSIGIAPTTVTLVRPRRSRSAFSALDQL 495
            T++ S  I+P +     PRR RS+ S+L  L
Sbjct: 1822 TSSTSSDISPMSEQKSLPRRGRSSRSSLRTL 1852


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 587  TNAVSIGIAPTTVTLVRPRRSRSAFSALDQL 495
            T++ S  I+P +     PRR RS+ S+L  L
Sbjct: 1818 TSSTSSDISPMSEQKSLPRRGRSSRSSLRTL 1848


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 558 YNCYTGSTSTIPERILCPGSAQ 493
           Y    GS  T  +R+L PGS Q
Sbjct: 913 YKISKGSWETDIDRVLVPGSQQ 934


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,473
Number of Sequences: 438
Number of extensions: 5070
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)