Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_P03
(863 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17) 31 0.92
SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 31 1.6
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0) 29 4.9
SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1) 29 4.9
SB_45460| Best HMM Match : Keratin_B2 (HMM E-Value=0.11) 29 4.9
SB_8869| Best HMM Match : Keratin_B2 (HMM E-Value=0.35) 29 4.9
SB_1496| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86) 29 6.5
SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14) 29 6.5
SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069) 29 6.5
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
>SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)
Length = 1850
Score = 31.5 bits (68), Expect = 0.92
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 8/124 (6%)
Frame = +3
Query: 354 PYPVEKKIPYP--VKVHVPQPYPXCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPS 527
P+P E++ P P + VP P+P + P P R + P E +P P+
Sbjct: 1466 PFPAERRTPAPDPAERRVPPPFPAERRTPAPD------PGERQISSPFPAERRIPPLDPA 1519
Query: 528 RQTRPRSRYMCQNLTPL----KRKF--MFQSKCTCPAPYQXXKKXPYPVKGSRTCACSLP 689
++ R + + TP +R+ +F +C P P ++ P R +P
Sbjct: 1520 KR-RVSPPFPAERRTPTPDPGERRVSPLFPDECQMPPPDPAERRVSPPFPAERRTPTPVP 1578
Query: 690 RIQR 701
+R
Sbjct: 1579 AERR 1582
>SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/56 (35%), Positives = 24/56 (42%)
Frame = +3
Query: 447 RDCQGTSSRTATLPSRKEGALPSTCPSRQTRPRSRYMCQNLTPLKRKFMFQSKCTC 614
R CQ T S P + A+P CP+ QT R C PL F+ KC C
Sbjct: 169 RSCQNTISSIPLKPGLEGYAMPRKCPTDQT---GRPPC----PLDPFFIMPDKCKC 217
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +2
Query: 323 SRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQL 445
S +PRR L +E P PR+S RS +LP L+N+ L
Sbjct: 373 SAPMPRRSISDLA--RELPTPRQSVRSVSLPDLTNVETLAL 411
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 332 LPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQL 445
+PRR L +E P PR+S RS +LP L+N+ L
Sbjct: 1 MPRRSISDLA--RELPTPRQSVRSVSLPDLTNVETLAL 36
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/48 (39%), Positives = 20/48 (41%)
Frame = +2
Query: 362 GRKENPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRRC 505
G LPR RS +LP LS S SR Q T R P S C
Sbjct: 675 GTSNKQLPRPHRRSTSLPSLSPDSSRDSDYQSRAQSTVRAPHPSPSAC 722
>SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
Length = 1357
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 492 RKEGALPSTCPSRQTRPRSRYMCQNLTPLKRKFMFQSKCTCPAPYQXXKK 641
R+ G S C RQT RY+C + + R+F + C PY K+
Sbjct: 316 RRYGVYTSCC-GRQTYDNRRYICCSGRVVPRRFGRNTSCCRYTPYNRLKQ 364
>SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 384 PVKVHVP-QPYPXCQTCPLPS*RDCQ-GTSSRTATLPSRKEGALPSTCP 524
P++ ++P P+P CQT PL + + T S P G+ P + P
Sbjct: 108 PIRDNLPLAPHPMCQTLPLQDNTESKLKTESEPTRSPQSDSGSTPPSSP 156
>SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)
Length = 798
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 332 LPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKRL 454
LP K P+P E P+ R+PT+ R ++M LT + L
Sbjct: 652 LPESKPAPIPVIPEAPVFDPKPRTPTVSRKTSMKLTAEEHL 692
>SB_45460| Best HMM Match : Keratin_B2 (HMM E-Value=0.11)
Length = 759
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 492 RKEGALPSTCPSRQTRPRSRYMCQNLTPLKRKFMFQSKCTCPAPYQXXKK 641
R+ G S C RQT RY+C + + R+F + C PY K+
Sbjct: 127 RRYGVYTSCC-GRQTYDNRRYICCSGRVVPRRFGRNTSCCRYTPYNRLKQ 175
>SB_8869| Best HMM Match : Keratin_B2 (HMM E-Value=0.35)
Length = 674
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 492 RKEGALPSTCPSRQTRPRSRYMCQNLTPLKRKFMFQSKCTCPAPYQXXKK 641
R+ G S C RQT RY+C + + R+F + C PY K+
Sbjct: 540 RRYGVYTSCC-GRQTYDNRRYICCSGRVVPRRFGRNTSCCRYTPYNRLKQ 588
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 492 RKEGALPSTCPSRQTRPRSRYMCQNLTPLKRKFMFQSKCTCPAPYQXXKK 641
R+ GA S C RQT RY+C + + R++ + C PY K
Sbjct: 250 RRYGAYTSCC-GRQTYDNRRYICCSGRVVLRRYGKNTSCCRYTPYNPLTK 298
>SB_1496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 408 PYPXCQTCPLPS*RDCQGTSSRTATLPSR 494
P P C +CPLP CQ + PSR
Sbjct: 482 PPPGCASCPLPGCASCQPPGCASCPGPSR 510
>SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)
Length = 809
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +2
Query: 311 R*ESSRSLPRRKAHP-LPGRKE-NPLPRESARSPTLPRLSNMSLTQLKRLSRYQFTYRNP 484
R + +++ +R +HP +P ++ NP + S P+++NMS+ + S +
Sbjct: 484 RMNAQQNMSQRLSHPSIPEQQAYNPYGNQQVMSQAPPQVNNMSMQNMPAYSSSGYPNMRG 543
Query: 485 TQSKRRCLTQYMSQ 526
Q +R+ MSQ
Sbjct: 544 NQFQRQLSMPVMSQ 557
>SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)
Length = 221
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -3
Query: 417 RGRVGERALSRGRGFSFLPGRGCAFRRGR 331
+GR+G R RGRG + PGRG RGR
Sbjct: 89 QGRLGARG--RGRGMARGPGRGMVGARGR 115
>SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)
Length = 932
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 384 PVKVHVPQPYPXCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQTRPRS 548
P+ + T +P +D Q +S TAT+P P T S T PR+
Sbjct: 715 PIATDIQASRKASSTATIPGSKDSQPATS-TATIPRATNTQAPKTASSANTIPRN 768
>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1299
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 371 ENPLPRESARSPTLPRLSNMSLTQLK 448
++P+P ESARS PR S+ S +Q K
Sbjct: 170 DHPVPTESARSARSPRKSSSSSSQAK 195
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,707,051
Number of Sequences: 59808
Number of extensions: 347463
Number of successful extensions: 1314
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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