Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P02
         (1104 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           30   2.9  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.8  

>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 23/118 (19%), Positives = 26/118 (22%)
 Frame = +3

Query: 618 PFFPPXXKXXXXXPKXSPXKXXGPGXXKXXPKXGFXPXXXPPXXFXXXXXPXXPPXXXFX 797
           P +PP        P   P            P   + P   PP        P  PP     
Sbjct: 114 PPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAP 173

Query: 798 XXPPXXPXKXXXXXXXXXPXGPPXXGGXXGPPKKXPXFXKXXXXXXPXKKXPPXKTXP 971
             PP  P               P       PP   P +        P    PP    P
Sbjct: 174 YPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPPPNAPNPPYPPPPNAPNP 231


>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 16/43 (37%), Positives = 16/43 (37%)
 Frame = +3

Query: 777 PPXXXFXXXPPXXPXKXXXXXXXXXPXGPPXXGGXXGPPKKXP 905
           PP   F   PP  P           P  PP  GG  GPPK  P
Sbjct: 644 PPNPFFGGIPPPPPG----GGMFPPPPPPPPGGGVPGPPKPPP 682


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 19/66 (28%), Positives = 19/66 (28%)
 Frame = +3

Query: 708  PKXGFXPXXXPPXXFXXXXXPXXPPXXXFXXXPPXXPXKXXXXXXXXXPXGPPXXGGXXG 887
            P  G  P   PP        P  PP       PP  P           P  PP  GG   
Sbjct: 925  PPGGNAPLPPPPPGGSAPSQP--PPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAP 982

Query: 888  PPKKXP 905
            PP   P
Sbjct: 983  PPPPPP 988


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,911,176
Number of Sequences: 59808
Number of extensions: 151853
Number of successful extensions: 187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3367499612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)