Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P02
         (1104 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61080.1 68414.m06877 proline-rich family protein                   33   0.25 
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    30   2.4  
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    30   2.4  
At5g59170.1 68418.m07416 proline-rich family protein contains pr...    29   7.2  

>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 33.5 bits (73), Expect = 0.25
 Identities = 20/83 (24%), Positives = 21/83 (25%)
 Frame = +3

Query: 657 PKXSPXKXXGPGXXKXXPKXGFXPXXXPPXXFXXXXXPXXPPXXXFXXXPPXXPXKXXXX 836
           P   P     P      P+    P   PP        P  PP       PP  P      
Sbjct: 513 PPPLPTTIAAPPPPPPPPRAAVAPPPPPPPPGTAAAPPPPPPPPGTQAAPPPPPPPPMQN 572

Query: 837 XXXXXPXGPPXXGGXXGPPKKXP 905
                P  P    G  GPP   P
Sbjct: 573 RAPSPPPMPMGNSGSGGPPPPPP 595


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 18/77 (23%), Positives = 19/77 (24%)
 Frame = +3

Query: 726 PXXXPPXXFXXXXXPXXPPXXXFXXXPPXXPXKXXXXXXXXXPXGPPXXGGXXGPPKKXP 905
           P   PP  +     P  PP       PP  P           P  PP       PP   P
Sbjct: 428 PPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSP 487

Query: 906 XFXKXXXXXXPXKKXPP 956
                     P    PP
Sbjct: 488 PPPPPPVYSPPPPPPPP 504


>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 26/110 (23%), Positives = 29/110 (26%), Gaps = 2/110 (1%)
 Frame = +3

Query: 657 PKXSPXKXXGPGXXKXXPKXGFXPXXXPPXXFXXXXXPXXPP--XXXFXXXPPXXPXKXX 830
           P+ SP    GP       + G  P    P  F     P  PP     F   P   P    
Sbjct: 78  PRPSPMARPGPPPPAAMARPGGPPQVSQPGGFPPVGRPVAPPSNQPPFGGRPSTGPL-VG 136

Query: 831 XXXXXXXPXGPPXXGGXXGPPKKXPXFXKXXXXXXPXKKXPPXKTXPXXG 980
                  P G P  G   G P   P   +      P    P     P  G
Sbjct: 137 GGSSFPQPGGFPASGPPGGVPSGPPSGARPIGFGSPPPMGPGMSMPPPSG 186


>At5g59170.1 68418.m07416 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 288

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 26/118 (22%), Positives = 32/118 (27%), Gaps = 2/118 (1%)
 Frame = +3

Query: 624 FPPXXKXXXXXPKXSPXKXXGPGXXKXXPKXGFXPXXX--PPXXFXXXXXPXXPPXXXFX 797
           +PP  +      K  P +   P   K  P+  + P     PP           PP   + 
Sbjct: 140 YPPPEQYPPPIKKYPPPEHYPPPIKKYPPQEQYPPPIKKYPPPEKYPPPIKKYPPPEQYP 199

Query: 798 XXPPXXPXKXXXXXXXXXPXGPPXXGGXXGPPKKXPXFXKXXXXXXPXKKXPPXKTXP 971
             PP                 PP       PP K P          P K  PP K  P
Sbjct: 200 --PPIKKYPPPIKKYPPPEEYPPPIKTYPHPPVKYPPPPYKTYPHPPIKTYPPPKECP 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,636,472
Number of Sequences: 28952
Number of extensions: 137523
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2763501360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)