Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_P01
(835 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 73 4e-14
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 38 0.002
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 37 0.003
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 37 0.003
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 35 0.012
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 35 0.016
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 31 0.15
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 31 0.20
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 31 0.27
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 31 0.27
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.81
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 28 1.4
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 28 1.4
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 28 1.4
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 28 1.4
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 28 1.9
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 28 1.9
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 27 2.5
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 2.5
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 4.3
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 27 4.3
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 26 5.7
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 26 7.6
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 26 7.6
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 26 7.6
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 7.6
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 73.3 bits (172), Expect = 4e-14
Identities = 28/79 (35%), Positives = 51/79 (64%)
Frame = +3
Query: 351 TKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIK 530
TK++++++ S DG++KFW K G+E++K F H A + + L T + +K++K
Sbjct: 56 TKSNYILSVSYDGYVKFWHKTPNGVEYIKEFHAHNAMLLSAELSQDERLFITGADDKSLK 115
Query: 531 VFDVVNFDMINMISIDFEP 587
VFDV + D++N+I ++F P
Sbjct: 116 VFDVESIDLVNIIDLEFLP 134
Score = 29.5 bits (63), Expect = 0.61
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 239 KKRKVLEFETLYLENLPSSETYERSFMHRXYCY 337
KKR + ++L NLP + Y +S+MH Y
Sbjct: 19 KKRIKQNHDQVFLHNLPDAPRYTKSYMHNAEIY 51
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +3
Query: 345 LVTKTDFVVTASQDGHLKFWKKQEEG-IEFVKH-FRCHLAPISHVAANSTGTLLCTASPE 518
+V ++++++S+D + W+ E H R HLA ++ V +S L+ TAS +
Sbjct: 309 VVVSENYIISSSRDHTARVWRLDATSPAEACMHVLRGHLASVNSVQYSSKTGLIVTASSD 368
Query: 519 KTIKVFDVVNFDMINMI 569
+T++ +D+ I +I
Sbjct: 369 RTLRTWDITTGHCIRII 385
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +3
Query: 360 DFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFD 539
+F+++ S+DG + W K + + + H API V + G TAS ++T +++D
Sbjct: 416 EFILSCSEDGFTRLWSKDTKST--IVKYAGHNAPIWDVQFSPFGYYFATASHDQTARLWD 473
Query: 540 V 542
V
Sbjct: 474 V 474
Score = 32.7 bits (71), Expect = 0.066
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +3
Query: 363 FVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDV 542
++ T S D + W + G V+ F H +P+S + ++ G L +A IKV+D+
Sbjct: 501 YLATGSSDHTTRMWDVRTGGT--VRVFNAHHSPVSALCMSADGLSLASADESGIIKVWDL 558
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/61 (29%), Positives = 35/61 (57%)
Frame = +3
Query: 360 DFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFD 539
+ V SQD F + G + ++ H P+S ++ NS+G+LL + S +KT++++D
Sbjct: 437 EIVCAGSQDSFEIFMWSVQTG-QLLETLAGHEGPVSSLSFNSSGSLLASGSWDKTVRIWD 495
Query: 540 V 542
+
Sbjct: 496 I 496
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 35.1 bits (77), Expect = 0.012
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +3
Query: 366 VVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDVV 545
+ TAS D ++ W + +F+ R H+A + A ++ LL ++S + T+KV+DV
Sbjct: 404 IATASFDSSVRLWDGKTG--KFLATLRGHVAAVYQCAWSTDSRLLVSSSQDTTLKVWDVR 461
Query: 546 NFDM-INMISIDFEPYRVEW 602
+ M ++ + + + V+W
Sbjct: 462 SKKMKFDLPGHEDQVFAVDW 481
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +3
Query: 366 VVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFD 539
+V+AS D L W Q+ K H ++H + + G + TAS + +++++D
Sbjct: 361 LVSASDDLQLILWDPQKSTKPITK-MHGHQKVVNHASFSPDGRCIATASFDSSVRLWD 417
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 34.7 bits (76), Expect = 0.016
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +3
Query: 363 FVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDV 542
F+V+ Q G L F E G F H +P+ VA + TLL A K I ++DV
Sbjct: 159 FIVSGHQTGQL-FLISTETGRLF-HVLSGHTSPVRSVAFSPGSTLLAAAGDSKMITIYDV 216
Query: 543 VNFDMINMI 569
++ D + +
Sbjct: 217 LSGDQVGQL 225
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 31.5 bits (68), Expect = 0.15
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = +3
Query: 366 VVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDVV 545
+V+ S D ++ W Q+ ++ H PI V+ ++ GTL TAS + +++DV+
Sbjct: 153 LVSGSWDETVRIWNLQDGTC--LRMLPAHSEPIISVSISADGTLCATASYDGMARIWDVL 210
Query: 546 N 548
+
Sbjct: 211 S 211
Score = 30.7 bits (66), Expect = 0.27
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 363 FVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFD 539
++ T+S DG +K W +E H IS V + L +AS +KTI+++D
Sbjct: 68 WIATSSSDGTIKIWSALTFRLECT--LFGHYRGISQVKWATGSKYLASASDDKTIRIWD 124
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 31.1 bits (67), Expect = 0.20
Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +3
Query: 303 MKEVSCTGXIVTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAAN 482
++ + C G ++ + +V+A + G L+ + + ++ + H I +A
Sbjct: 430 IRTIEC-GYVLAASFINNDKCIVSAYKSGELEVYDIASSSL--IERIQAHDGAIWDLAVG 486
Query: 483 STGTLLCTASPEKTIKVFDV-VNFDMI 560
GT TAS + T+K++ + +FD +
Sbjct: 487 HDGTYFATASADHTVKLWSLKSSFDFV 513
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 30.7 bits (66), Expect = 0.27
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 432 VKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDV 542
+K + H P+ + + T TLL T E +KV+D+
Sbjct: 96 IKSMKAHETPVITMTIDPTNTLLATGGAEGLVKVWDI 132
Score = 29.5 bits (63), Expect = 0.61
Identities = 16/81 (19%), Positives = 35/81 (43%)
Frame = +3
Query: 366 VVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDVV 545
+ + + D ++ W V F H + I + TG+ L + S +KT++V+++
Sbjct: 162 LASGADDSRVRLWDLNSSRSMAV--FEGHSSVIRGLTFEPTGSFLLSGSRDKTVQVWNIK 219
Query: 546 NFDMINMISIDFEPYRVEWVH 608
+ I + + WV+
Sbjct: 220 KRSAVRTIPVFHSVEAIGWVN 240
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 30.7 bits (66), Expect = 0.27
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 270 YTWRICLHQKHMKEVSCTGXIVTHVLVTKTD-FVVTASQDGHLKFW 404
Y + + +K + S +G VT V++ + +VTAS DG LKFW
Sbjct: 471 YNMQSGIKRKSFGQSSLSGKPVTAVMLDNVNRILVTASLDGILKFW 516
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.1 bits (62), Expect = 0.81
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 441 FRCHLAPISHVAANSTGTLLCTASPEKTIKVFDVVNFDMI 560
F H + ++ + G L +AS +KT +FDVVN +
Sbjct: 209 FHDHSDEVWQISYSHNGRYLASASKDKTAIIFDVVNLKRV 248
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +3
Query: 426 EFVKHFRCHLAPISHVAANSTGT-LLCTASPEKTIKVFDVVN-FDMINMI-SIDFEPYRV 596
E K + H I+ VA N LL TAS +KT+ ++D+ N + ++ + + E Y +
Sbjct: 272 EAPKVIQAHSKAINAVAINPFNDYLLATASADKTVALWDLRNPYQRLHTLEGHEDEVYGL 331
Query: 597 EW 602
EW
Sbjct: 332 EW 333
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 432 VKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDV 542
VK F+ H I+ + + L TAS +KT+KV+D+
Sbjct: 325 VKQFQAHSEYITSLDFSHPFGTLATASTDKTVKVWDM 361
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 450 HLAPISHVAANSTGTLLCTASPEKTIKVFDVV 545
H AP++ +A +S L+ T + +KT++ +D+V
Sbjct: 434 HTAPVTALALSSDDVLI-TGADDKTVRQWDIV 464
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 333 VTHVLVTKTD-FVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTA 509
VT + ++ D F+ S D ++ W V+ H + +A + ++L +
Sbjct: 446 VTAIAISPNDQFIAVGSLDQIIRVWSVSGT---LVERLEGHKESVYSIAFSPDSSILLSG 502
Query: 510 SPEKTIKVFDV 542
S +KTIKV+++
Sbjct: 503 SLDKTIKVWEL 513
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 453 LAPISHVAANSTGTLLCTASPEKTIKVFDVVNFDMINMISIDFEPYR-VEW 602
LA S ++NS LL TAS + T ++FD I + + E R V+W
Sbjct: 234 LAVRSIKSSNSAHDLLATASYDMTSRIFDPEQHSCIRKVDLHSEFVRDVDW 284
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/61 (24%), Positives = 33/61 (54%)
Frame = +3
Query: 363 FVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDV 542
+ ++AS D ++ W E+G E F H + + V+ + + + S +KTIK++++
Sbjct: 77 YALSASWDKTIRLWDL-EKG-ECTHQFVGHTSDVLSVSISPDNRQVVSGSRDKTIKIWNI 134
Query: 543 V 545
+
Sbjct: 135 I 135
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/70 (18%), Positives = 36/70 (51%)
Frame = +3
Query: 363 FVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDV 542
++ + +D +K W + + ++H+ HL+ + + + T +L TA + +V+D+
Sbjct: 219 YLFSCGEDKMVKCWDLETNKV--IRHYHGHLSGVYALKLHPTLDVLVTAGRDAVARVWDM 276
Query: 543 VNFDMINMIS 572
++++S
Sbjct: 277 RTRQNVHVLS 286
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +3
Query: 405 KKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDVVNFDMINMISIDFE 584
K+Q+ +EF++ R HL+ + + N T TLL P F + + +D +
Sbjct: 142 KRQKSSLEFLEQVRQHLSRLPAIDPN-TRTLLVCGYPNVGKSSF----MNKVTRAQVDVQ 196
Query: 585 PY 590
PY
Sbjct: 197 PY 198
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +3
Query: 363 FVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDV 542
+ TAS D + W I ++ F HL+ + V + + T S +KT +++DV
Sbjct: 435 YFATASHDQTAQLWSCDH--IYPLRVFAGHLSDVDCVTFHPNSAYVLTGSSDKTCRLWDV 492
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 363 FVVTASQDGHLKFWKKQE 416
+V+TASQDG +K W +E
Sbjct: 149 YVLTASQDGLIKLWDYKE 166
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/60 (21%), Positives = 31/60 (51%)
Frame = +3
Query: 366 VVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDVV 545
+++AS DG +K W + ++ F + ++ + +S + T S ++IK++D +
Sbjct: 1194 LISASSDGEVKLWDIRMN--HSLQTFSTDNSGLTSLTVHSHAPVYATGSSNQSIKIWDTL 1251
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 640 QLKLRWGXPAECTHSTRYGSKSI 572
QL ++WG E THS RY SK +
Sbjct: 488 QLIIKWG--GEFTHSARYQSKDL 508
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +3
Query: 363 FVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTAS 512
++ ++ G+L W + + + FR H P++ + ++ G +L TAS
Sbjct: 90 WLAAGTEKGNLYIWSLKSGAL--IYFFRAHYQPLTILKFSNDGMVLFTAS 137
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +3
Query: 486 TGTLLCTASPEKT-IKVFDVVNFDMI---NMISIDFEPYRVEWVHSAG*PH 626
T T +C + +VF+ VN + NM+ D++ YR + +H AG H
Sbjct: 706 TLTTMCFGGDDNCGCQVFEDVNSSLEYCENMLLDDYDVYRTKLLHKAGYSH 756
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 354 KTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAAN-STGTLLCTASPEKTIK 530
+ ++TAS D +K W + + G H +P++ + N GT + + +
Sbjct: 399 RISLLLTASSDTTVKLWSRGDAGAFECLHVFSFSSPVNCIDWNLREGTPILAVASNSIVS 458
Query: 531 VFDVVNFDMI 560
+++ ++ +
Sbjct: 459 MYNAISLQQL 468
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = +3
Query: 426 EFVKHFRCHLAPISHVAANSTGTLL--CTASPEKTIKVFDVVNFDMINMISIDFEPYRVE 599
E K F H +SH N ++ C S + ++ + D EPYR++
Sbjct: 1056 ELQKLFGIHFHKLSHKNPNEIIRMILHCDDSMNECVEFLSSDKVLNQPKLKADLEPYRID 1115
Query: 600 WVH 608
W +
Sbjct: 1116 WAN 1118
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,649
Number of Sequences: 5004
Number of extensions: 54371
Number of successful extensions: 198
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -