Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_P01
         (835 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8893| Best HMM Match : No HMM Matches (HMM E-Value=.)              133   1e-31
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)                34   0.12 
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24)                   33   0.22 
SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)                  33   0.29 
SB_16786| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.66 
SB_30344| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59)                     31   1.5  
SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59)                     31   1.5  
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_17121| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_21802| Best HMM Match : Eco57I (HMM E-Value=6.4)                    30   2.0  
SB_3099| Best HMM Match : TFIIE_beta (HMM E-Value=1.8e-20)             30   2.0  
SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_30612| Best HMM Match : HSP9_HSP12 (HMM E-Value=6.7)                29   6.1  
SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  

>SB_8893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score =  133 bits (322), Expect = 1e-31
 Identities = 55/96 (57%), Positives = 78/96 (81%)
 Frame = +3

Query: 330 IVTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTA 509
           ++TH++VT+T+F+VTAS DGH+KFWKKQEEGIEFVKHF+ HL  I  ++A++ G LLC+ 
Sbjct: 61  VITHLVVTETNFLVTASCDGHIKFWKKQEEGIEFVKHFKSHLGSIQGISASADGQLLCSV 120

Query: 510 SPEKTIKVFDVVNFDMINMISIDFEPYRVEWVHSAG 617
           + +K++KVFDV+NFDMINM+ ++  P + EWV   G
Sbjct: 121 ASDKSMKVFDVINFDMINMLKLNHAPGQCEWVFPRG 156



 Score = 69.7 bits (163), Expect = 3e-12
 Identities = 34/58 (58%), Positives = 44/58 (75%)
 Frame = +2

Query: 152 DEKAAGECDGDDPENWIGPMPSEAVKPKQKKRKVLEFETLYLENLPSSETYERSFMHR 325
           + K A E D +D E+ IGPMP  A  PK KK+K+LEFE +YL+NLPS+E YE+S+MHR
Sbjct: 5   ERKRAAESDSED-EDVIGPMP--APDPKPKKKKMLEFEPVYLQNLPSAEGYEKSYMHR 59


>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2332

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 18/69 (26%), Positives = 38/69 (55%)
 Frame = +3

Query: 363 FVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDV 542
           +++TA++DG +K W      ++ +  F  HL  ++ +A    G+ + + S + TI+V+ +
Sbjct: 198 YLITAARDGSIKVW-DDTGNVKII--FIGHLKAVNTLAIYPFGSYIMSGSSDNTIRVWSL 254

Query: 543 VNFDMINMI 569
              D +N I
Sbjct: 255 DMSDEVNRI 263


>SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)
          Length = 1049

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +3

Query: 357  TDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAP--ISHVAANSTGTLLCTASPEKTIK 530
            T+     S  G L+FW  +   +E  +H      P  I+    N  GTLL T + +  I+
Sbjct: 884  TNLTTAGSNSGVLQFWDMKTLKVE--RHLPIEPTPSCINCTGFNHNGTLLVTGATDGMIR 941

Query: 531  VFDVVNFDMI 560
            ++D+  FD +
Sbjct: 942  LYDMHTFDCL 951


>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1649

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 20/83 (24%), Positives = 38/83 (45%)
 Frame = +3

Query: 321 TGXIVTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLL 500
           T  + T  L    DF+V+ + D  +K W    + +  V   + H   +S V        +
Sbjct: 748 TKLVYTLALSPHADFLVSGAFDHTVKIW--DMDTLSLVHTLKGHKNWVSGVLVTPDSKRI 805

Query: 501 CTASPEKTIKVFDVVNFDMINMI 569
            ++S +KT+K++DV     +N +
Sbjct: 806 ISSSYDKTVKIWDVETCAFVNSL 828


>SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24)
          Length = 208

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 17/59 (28%), Positives = 34/59 (57%)
 Frame = +3

Query: 366 VVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDV 542
           + +A+ D  +K W   E G +F+   R H+  +  +A ++   L+C+ S + T+KV+D+
Sbjct: 74  IASAAFDKSVKLWNG-ETG-KFITSLRGHVNCVYQIAWSADCRLICSGSADSTLKVWDM 130


>SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)
          Length = 906

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = +3

Query: 291 HQKH-MKEVSCTGXIVTHVLVTKTD-FVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPI 464
           +QKH +K  +     +TH     +   +VT+S D   + W  +   I  V  F+ H   +
Sbjct: 257 NQKHNIKSHNGHDQELTHTCTHPSQQLIVTSSTDTTFRLWDFRTPSIHSVNVFQGHSDTV 316

Query: 465 SHVAANSTGTLLCTASPEKTIKV 533
              A ++T  ++ + S ++T+KV
Sbjct: 317 RSTAFSTTKDIVVSGSDDRTVKV 339


>SB_16786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 450 HLAPISHVAANSTGTLLCTASPEKT-IKVFDVVN 548
           H AP+S +A N  GT L TAS + T I+VFD  N
Sbjct: 125 HEAPMSCLAMNLQGTRLATASEKGTLIRVFDTSN 158


>SB_30344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 17/70 (24%), Positives = 30/70 (42%)
 Frame = +3

Query: 351 TKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIK 530
           +K DF+ + S D   K W    E   +    R H   ++ +        L T+S +KT+ 
Sbjct: 255 SKGDFLASCSMDNTSKIWDLNSERCRYT--LRGHADSVNSIVFLPYSNTLLTSSADKTLS 312

Query: 531 VFDVVNFDMI 560
           ++D    D +
Sbjct: 313 LWDARTGDTV 322


>SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59)
          Length = 752

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 489 GTLLCTASPEKTIKVFDVVNFDMINMISIDFEPYRVEW 602
           G LLC       IK FD+ N + ++  SI   P  +EW
Sbjct: 70  GNLLCVGYESGEIKSFDIENAECVHKCSIGNTPTCMEW 107


>SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59)
          Length = 752

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 489 GTLLCTASPEKTIKVFDVVNFDMINMISIDFEPYRVEW 602
           G LLC       IK FD+ N + ++  SI   P  +EW
Sbjct: 70  GNLLCVGYESGEIKSFDIENAECVHKCSIGNTPTCMEW 107


>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +2

Query: 137 KRTADDEKAAGECDGDDPENWIGPMPSEAVKPKQKKRKVLEFETLYLENLPSSETYERS 313
           K  A++++  GE   DD E  +  +PS   KP++KK+  +    L  EN   SE  E S
Sbjct: 8   KLQAENDQNPGELGDDDEETDLNLIPS---KPRRKKKATINPFDLLKENGTESEDDEES 63


>SB_17121| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 596

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = +3

Query: 309 EVSCTGXIVTH---VLVTKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAA 479
           ++S TG I T    V+  +  ++ +A +D  +K W  +   +  ++H+  HL+ +     
Sbjct: 312 KLSLTGHISTVRGLVVSPRHPYLFSAGEDKLVKCWDLEYNKV--IRHYHGHLSAVYDADI 369

Query: 480 NSTGTLLCTASPEKTIKVFDV 542
           + T  +L T   + T +V+D+
Sbjct: 370 HPTIDVLLTCGRDATTRVWDI 390


>SB_21802| Best HMM Match : Eco57I (HMM E-Value=6.4)
          Length = 126

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +2

Query: 86  SHNSFKLIK*I*NMSAEKRTADDEKAAGECDGDDPENWIGPMPSEAV 226
           +HNSF+L+  +  +   +  AD+ +   +   +DPE++ G  P E +
Sbjct: 60  AHNSFRLLHHVQPLQWNETLADEAQRIAKTIANDPESFQGESPGENI 106


>SB_3099| Best HMM Match : TFIIE_beta (HMM E-Value=1.8e-20)
          Length = 318

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 278 ENLPSSETYERSFMHRXYCYTRTCHKN*FCGNSKSGWSFEILEETRRRYR 427
           E+LP ++   R+   R    TR+C K      +  G+  EI EE ++ +R
Sbjct: 172 ESLPDADKIVRNVSSRIMFITRSCDKKVLLFYNNKGYKMEIDEEFQKHWR 221


>SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 817

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = +2

Query: 149 DDEKAAGECDGDDPENWIGPMPSEAVKPKQKK----RKVLEFETLYLENLPSSETYERSF 316
           DD+   G+ DGD   +  G +   ++  K KK    R+ + F      + P+  T   SF
Sbjct: 713 DDDDGDGDGDGDGDGDGDGALDLSSIDRKDKKDKSRRRSMSFNVGQRSSTPTDSTKRHSF 772

Query: 317 MH 322
            H
Sbjct: 773 RH 774


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 429  FVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKV--FDVVN 548
            ++   R H   I  +A +STG L+ T S +K+IKV  FD  N
Sbjct: 1046 YLSRTRHHRGSIYCMAWSSTGDLIATGSNDKSIKVLHFDADN 1087


>SB_30612| Best HMM Match : HSP9_HSP12 (HMM E-Value=6.7)
          Length = 184

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
 Frame = +3

Query: 366 VVTASQDGHLKFWKKQEE---GIEFVKHFRCHLAPISHVAANSTGTLLC----TASPEKT 524
           ++   Q+  L+F  KQ +   G+ F ++F  H A ++H+   +TG  LC     + P+++
Sbjct: 24  LMAVRQEPLLEFHCKQMDHFVGVSFYENF--HFALVAHLVKGNTGLELCHLFDLSKPQRS 81

Query: 525 IKVFDVV 545
           I   D+V
Sbjct: 82  IDKGDIV 88


>SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 366 VVTASQDGHLKFWKKQEE--GIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFD 539
           +V  S +G +  W +     G+E +   + H   +S V+ +   + + +AS +++IKV+D
Sbjct: 56  IVVGSDNGAVDIWSQSGSLLGLENLASLKEHDNVVSSVSVDCEKSRIISASWDRSIKVWD 115

Query: 540 VVNFDMINMI 569
           + +   I  +
Sbjct: 116 LTSEQCIRTL 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,883,516
Number of Sequences: 59808
Number of extensions: 414751
Number of successful extensions: 1288
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)