Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_P01
(835 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110500-6|CAB60429.1| 629|Caenorhabditis elegans Hypothetical ... 138 3e-33
AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical ... 36 0.027
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 36 0.036
Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical p... 36 0.047
Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical pr... 36 0.047
Z73978-3|CAA98293.1| 501|Caenorhabditis elegans Hypothetical pr... 33 0.25
Z74030-18|CAA98448.1| 494|Caenorhabditis elegans Hypothetical p... 31 1.0
Z73970-6|CAA98247.1| 494|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical pr... 31 1.3
AL031633-25|CAI06057.1| 354|Caenorhabditis elegans Hypothetical... 31 1.3
AL031633-2|CAD60426.1| 388|Caenorhabditis elegans Hypothetical ... 31 1.3
AL031633-1|CAA21019.3| 386|Caenorhabditis elegans Hypothetical ... 31 1.3
AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein. 31 1.3
Z92833-2|CAB07379.1| 891|Caenorhabditis elegans Hypothetical pr... 30 2.3
AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical... 29 3.1
Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical p... 29 4.1
Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical p... 29 4.1
U23176-7|AAC46713.4| 454|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF047651-2|AAL13318.1| 486|Caenorhabditis elegans Hypothetical ... 29 4.1
AF047651-1|AAK67207.1| 484|Caenorhabditis elegans Hypothetical ... 29 4.1
U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synapti... 29 5.4
U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synapti... 29 5.4
U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synapti... 29 5.4
AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform... 29 5.4
AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform... 29 5.4
AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein. 29 5.4
AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isofo... 29 5.4
Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical pr... 28 7.2
AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical ... 28 7.2
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ... 28 9.5
>AL110500-6|CAB60429.1| 629|Caenorhabditis elegans Hypothetical
protein Y87G2A.6 protein.
Length = 629
Score = 138 bits (335), Expect = 3e-33
Identities = 60/99 (60%), Positives = 75/99 (75%), Gaps = 2/99 (2%)
Frame = +3
Query: 333 VTHVLVTKTDFVVTASQDGHLKFWKKQE-EGIEFVKHFRCHLAPISHVAANSTGTLLCT- 506
++HV+ TKTDF++TAS DGHLKFWKK+ EG+EFVKHFRCHL+ SH+ AN GTLL T
Sbjct: 57 ISHVIATKTDFIITASVDGHLKFWKKKHSEGVEFVKHFRCHLSEFSHICANIDGTLLATV 116
Query: 507 ASPEKTIKVFDVVNFDMINMISIDFEPYRVEWVHSAG*P 623
+K++KVFD+ NFDMINMI +DF P WVH + P
Sbjct: 117 CEADKSVKVFDIENFDMINMIKLDFPPKTANWVHQSNDP 155
Score = 36.7 bits (81), Expect = 0.020
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 230 PKQKKRKVLEFETLYLENLPSSETYERSFMHR 325
P K+ L+ E+ +L ++PSS YE+SFMHR
Sbjct: 23 PDAPKKPQLKHESEFLRSIPSSSQYEKSFMHR 54
>AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical
protein W07E6.2 protein.
Length = 473
Score = 36.3 bits (80), Expect = 0.027
Identities = 18/62 (29%), Positives = 35/62 (56%)
Frame = +3
Query: 357 TDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVF 536
T ++ +AS D +K W + +++ R H+ P+ VA ++ LL + S + T+KVF
Sbjct: 372 TRYIASASFDKSVKLWCGRTG--KYLASLRGHVGPVYQVAWSADSRLLVSGSADSTLKVF 429
Query: 537 DV 542
++
Sbjct: 430 EL 431
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 35.9 bits (79), Expect = 0.036
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +3
Query: 321 TGXIVTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLL 500
TG +V+ L + F++T S D ++ W + + +AP+S +A S +
Sbjct: 995 TGSVVSLQLTSNNQFLITGSGDFVVQMWDVTNG--KCISRMGGLMAPVSTLAITSNDAFV 1052
Query: 501 CTASPEKTIKVFDVV 545
A ++T+KVF V
Sbjct: 1053 VVACEDETLKVFSTV 1067
>Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical
protein D2030.9b protein.
Length = 530
Score = 35.5 bits (78), Expect = 0.047
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +3
Query: 357 TDFVVTASQDGHLKFWKKQ---EEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTI 527
++ + +A DG +K W K+ + +E V F H ++HV + L + S ++TI
Sbjct: 283 SNLIYSAGDDGLVKVWDKRAWSDGDVEPVGVFAGHRDGVTHVDSRQDERYLLSNSKDQTI 342
Query: 528 KVFDVVNFDMINMISID 578
KV+D+ F NM ++
Sbjct: 343 KVWDLRKFS--NMSGVE 357
>Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical
protein D2030.9a protein.
Length = 571
Score = 35.5 bits (78), Expect = 0.047
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +3
Query: 357 TDFVVTASQDGHLKFWKKQ---EEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTI 527
++ + +A DG +K W K+ + +E V F H ++HV + L + S ++TI
Sbjct: 324 SNLIYSAGDDGLVKVWDKRAWSDGDVEPVGVFAGHRDGVTHVDSRQDERYLLSNSKDQTI 383
Query: 528 KVFDVVNFDMINMISID 578
KV+D+ F NM ++
Sbjct: 384 KVWDLRKFS--NMSGVE 398
>Z73978-3|CAA98293.1| 501|Caenorhabditis elegans Hypothetical
protein ZC302.2a protein.
Length = 501
Score = 33.1 bits (72), Expect = 0.25
Identities = 15/62 (24%), Positives = 33/62 (53%)
Frame = +3
Query: 363 FVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDV 542
++ T S D +K W + + +++ H I+ + +S + +AS + T+K+FDV
Sbjct: 227 YLGTGSADKQIKVWNTVD--MTYLQTLASHQLGINDFSWSSNSQFIASASDDTTVKIFDV 284
Query: 543 VN 548
++
Sbjct: 285 IS 286
>Z74030-18|CAA98448.1| 494|Caenorhabditis elegans Hypothetical
protein D1054.15 protein.
Length = 494
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/81 (23%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = +3
Query: 309 EVSCTGXI--VTHVLVT-KTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAA 479
++S TG I V V V+ + F+ + +D +K W + + ++H+ HL+ + ++
Sbjct: 219 KLSLTGHISSVRAVKVSPRHPFLFSGGEDKQVKCWDLEYNKV--IRHYHGHLSAVQALSV 276
Query: 480 NSTGTLLCTASPEKTIKVFDV 542
+ + +L T + + T +V+D+
Sbjct: 277 HPSLDVLVTCARDSTARVWDM 297
>Z73970-6|CAA98247.1| 494|Caenorhabditis elegans Hypothetical
protein D1054.15 protein.
Length = 494
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/81 (23%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = +3
Query: 309 EVSCTGXI--VTHVLVT-KTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAA 479
++S TG I V V V+ + F+ + +D +K W + + ++H+ HL+ + ++
Sbjct: 219 KLSLTGHISSVRAVKVSPRHPFLFSGGEDKQVKCWDLEYNKV--IRHYHGHLSAVQALSV 276
Query: 480 NSTGTLLCTASPEKTIKVFDV 542
+ + +L T + + T +V+D+
Sbjct: 277 HPSLDVLVTCARDSTARVWDM 297
>Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical
protein C14B1.4 protein.
Length = 376
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +3
Query: 363 FVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDV 542
++ T+S D +K W E + H ++ +A +S + +AS +KT+K+F++
Sbjct: 101 YLGTSSADKTVKIWNMDHMICE--RTLTGHKLGVNDIAWSSDSRCVVSASDDKTLKIFEI 158
Query: 543 VNFDM 557
V M
Sbjct: 159 VTSRM 163
>Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical
protein T03F6.5 protein.
Length = 404
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +3
Query: 360 DFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVF 536
DFV++AS+D +K W + FR H + + ++ GTL +AS ++T+ V+
Sbjct: 204 DFVLSASRDHTIKQWDISTGYCVYT--FRGHNDWVRMIRISNDGTLFASASLDQTVTVW 260
>AL031633-25|CAI06057.1| 354|Caenorhabditis elegans Hypothetical
protein Y39A1A.1c protein.
Length = 354
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 450 HLAPISHVAANSTGTLLCTASPEKT-IKVFD 539
HL I+ VA N GTL+ T S + T I+VFD
Sbjct: 186 HLTDIAQVALNCQGTLVATGSTKGTVIRVFD 216
>AL031633-2|CAD60426.1| 388|Caenorhabditis elegans Hypothetical
protein Y39A1A.1b protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 450 HLAPISHVAANSTGTLLCTASPEKT-IKVFD 539
HL I+ VA N GTL+ T S + T I+VFD
Sbjct: 218 HLTDIAQVALNCQGTLVATGSTKGTVIRVFD 248
>AL031633-1|CAA21019.3| 386|Caenorhabditis elegans Hypothetical
protein Y39A1A.1a protein.
Length = 386
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 450 HLAPISHVAANSTGTLLCTASPEKT-IKVFD 539
HL I+ VA N GTL+ T S + T I+VFD
Sbjct: 218 HLTDIAQVALNCQGTLVATGSTKGTVIRVFD 248
>AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein.
Length = 404
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +3
Query: 360 DFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVF 536
DFV++AS+D +K W + FR H + + ++ GTL +AS ++T+ V+
Sbjct: 204 DFVLSASRDHTIKQWDISTGYCVYT--FRGHNDWVRMIRISNDGTLFASASLDQTVTVW 260
>Z92833-2|CAB07379.1| 891|Caenorhabditis elegans Hypothetical
protein F38A6.2 protein.
Length = 891
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 333 VTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFVKHF 443
+T +L ++ ++T+SQ G L+ W ++ +EF K F
Sbjct: 631 LTFLLTCSSNQLITSSQCGTLRIWNHIDKKVEFSKKF 667
>AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical
protein ZK488.1 protein.
Length = 358
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 419 FFLFLPKFQMTILTCCYHKISFCDKY 342
FF F P FQ+ IL C +H + D++
Sbjct: 161 FFAFFPNFQLKILECIWHIWATLDRH 186
>Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 29.1 bits (62), Expect = 4.1
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Frame = +3
Query: 372 TASQDGHLKFW----KKQEE------GIEFVKHFRCHLAPISHVAANSTGTLLCTASPEK 521
TAS+DG +K W KK E+ +E V FR H P+ + + TG L T +
Sbjct: 376 TASEDGLIKLWNLDQKKDEKHNSGGTELEPVYTFRGHKGPVLCLVLSPTGDHLYTGGIDG 435
Query: 522 TIKVFDV 542
I F+V
Sbjct: 436 NICCFNV 442
>Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 29.1 bits (62), Expect = 4.1
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Frame = +3
Query: 372 TASQDGHLKFW----KKQEE------GIEFVKHFRCHLAPISHVAANSTGTLLCTASPEK 521
TAS+DG +K W KK E+ +E V FR H P+ + + TG L T +
Sbjct: 376 TASEDGLIKLWNLDQKKDEKHNSGGTELEPVYTFRGHKGPVLCLVLSPTGDHLYTGGIDG 435
Query: 522 TIKVFDV 542
I F+V
Sbjct: 436 NICCFNV 442
>U23176-7|AAC46713.4| 454|Caenorhabditis elegans Hypothetical
protein F21H12.1 protein.
Length = 454
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +3
Query: 366 VVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDVV 545
V DG + + I + F H P+S ++ + G L T+S + +I +FDV+
Sbjct: 40 VAVGCTDGRVLIYDFMTRNI--ARTFSAHCLPVSCLSWSRDGRKLLTSSADNSIAMFDVL 97
Query: 546 NFDMINMI 569
+++ I
Sbjct: 98 AGTLLHRI 105
>AF047651-2|AAL13318.1| 486|Caenorhabditis elegans Hypothetical
protein C05D2.10b protein.
Length = 486
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 450 HLAPISHVAANSTGTLLCTASPEKTIKVFDVVNFDMINMIS 572
H AP+S + G + TAS ++T V+DV +++N++S
Sbjct: 279 HRAPVSCCEWLAGGQQMVTASWDRTANVWDVEKGEVVNILS 319
>AF047651-1|AAK67207.1| 484|Caenorhabditis elegans Hypothetical
protein C05D2.10a protein.
Length = 484
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 450 HLAPISHVAANSTGTLLCTASPEKTIKVFDVVNFDMINMIS 572
H AP+S + G + TAS ++T V+DV +++N++S
Sbjct: 277 HRAPVSCCEWLAGGQQMVTASWDRTANVWDVEKGEVVNILS 317
>U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform d protein.
Length = 1058
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 321 TGXIVTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFV 434
TG + + VVT +DG LKFW++ E ++ +
Sbjct: 382 TGGLGRECATGHQELVVTGHKDGSLKFWQETGEHLQIL 419
>U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform c protein.
Length = 1211
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 321 TGXIVTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFV 434
TG + + VVT +DG LKFW++ E ++ +
Sbjct: 382 TGGLGRECATGHQELVVTGHKDGSLKFWQETGEHLQIL 419
>U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform a protein.
Length = 1124
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 321 TGXIVTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFV 434
TG + + VVT +DG LKFW++ E ++ +
Sbjct: 417 TGGLGRECATGHQELVVTGHKDGSLKFWQETGEHLQIL 454
>AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform E
protein.
Length = 1133
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 321 TGXIVTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFV 434
TG + + VVT +DG LKFW++ E ++ +
Sbjct: 417 TGGLGRECATGHQELVVTGHKDGSLKFWQETGEHLQIL 454
>AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform D
protein.
Length = 1128
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 321 TGXIVTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFV 434
TG + + VVT +DG LKFW++ E ++ +
Sbjct: 417 TGGLGRECATGHQELVVTGHKDGSLKFWQETGEHLQIL 454
>AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein.
Length = 1058
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 321 TGXIVTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFV 434
TG + + VVT +DG LKFW++ E ++ +
Sbjct: 382 TGGLGRECATGHQELVVTGHKDGSLKFWQETGEHLQIL 419
>AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isoform
A protein.
Length = 1124
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 321 TGXIVTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFV 434
TG + + VVT +DG LKFW++ E ++ +
Sbjct: 417 TGGLGRECATGHQELVVTGHKDGSLKFWQETGEHLQIL 454
>Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical
protein K04G11.4 protein.
Length = 395
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3
Query: 363 FVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDV 542
++ + S D +K W+ + K H I+ + +S L+ + S +K +KVFDV
Sbjct: 121 YMGSGSADCSIKIWRMD---FVYEKTLMGHRLGINEFSWSSDSKLIVSCSDDKLVKVFDV 177
>AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical
protein Y54H5A.1 protein.
Length = 453
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Frame = +3
Query: 360 DFVVTASQDGHLKFWK-KQEEGIEFVKHFRCHLAPISHV--AANSTGTLLCTASPEKTIK 530
+ +V+ DG LK W K + + V F+ H +PI+ V + T T + + ++T
Sbjct: 335 NLIVSGGDDGELKIWSLKTIQFGQPVALFKYHNSPITSVDWHPHETTTFMASGEDDQT-T 393
Query: 531 VFDVVNFDMINMISIDFEPYRVEWVH 608
++D+ + +I+ P ++ +VH
Sbjct: 394 IWDIAT-EADGQTNIEGVPPQLMFVH 418
>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
protein ZC123.3 protein.
Length = 1623
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 351 TKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVA--ANSTGTLLC 503
TK + + D HL ++ IEF +F C AP+S + S G+L+C
Sbjct: 168 TKGNLSIHMQSDKHLHAVQELPNSIEFAANFACG-APVSRSSPIEESDGSLVC 219
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,136,163
Number of Sequences: 27780
Number of extensions: 314921
Number of successful extensions: 910
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -