Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_P01
(835 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase cyc... 115 3e-26
At1g24130.1 68414.m03044 transducin family protein / WD-40 repea... 41 9e-04
At3g10530.1 68416.m01264 transducin family protein / WD-40 repea... 39 0.004
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 39 0.005
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 38 0.011
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 36 0.025
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 36 0.033
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 35 0.077
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 34 0.10
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 34 0.10
At3g06880.1 68416.m00817 transducin family protein / WD-40 repea... 34 0.13
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 34 0.13
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 33 0.31
At1g54710.1 68414.m06237 expressed protein contains 3 WD-40 repe... 32 0.41
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 32 0.54
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 31 0.94
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 31 0.94
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 31 0.94
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 31 0.94
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 31 0.94
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 31 0.94
At1g03380.1 68414.m00317 expressed protein 31 0.94
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 30 1.6
At5g37350.2 68418.m04487 RIO1 family protein similar to extragen... 30 2.2
At5g37350.1 68418.m04486 RIO1 family protein similar to extragen... 30 2.2
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 30 2.2
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 30 2.2
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 29 3.8
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 29 3.8
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 29 3.8
At1g77500.1 68414.m09025 expressed protein contains Pfam domains... 29 3.8
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 29 3.8
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea... 29 5.0
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 29 5.0
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 29 5.0
At5g67050.1 68418.m08453 lipase class 3 family protein similar t... 28 6.6
At5g52250.1 68418.m06485 transducin family protein / WD-40 repea... 28 6.6
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 28 6.6
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 28 6.6
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 28 6.6
At5g66240.2 68418.m08345 transducin family protein / WD-40 repea... 28 8.8
At5g66240.1 68418.m08344 transducin family protein / WD-40 repea... 28 8.8
At5g54730.1 68418.m06815 expressed protein 28 8.8
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 28 8.8
At3g30710.1 68416.m03897 hypothetical protein similar to Arginin... 28 8.8
At1g53510.1 68414.m06068 mitogen-activated protein kinase, putat... 28 8.8
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea... 28 8.8
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 28 8.8
>At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to SP|P87051
Peptidyl-prolyl cis-trans isomerase cyp2 (EC 5.2.1.8)
(Cyclophilin cyp2) {Schizosaccharomyces pombe}; contains
Pfam profiles PF00160: peptidyl-prolyl cis-trans
isomerase cyclophilin-type, PF00400: WD domain G-beta
repeat
Length = 631
Score = 115 bits (277), Expect = 3e-26
Identities = 49/96 (51%), Positives = 66/96 (68%)
Frame = +3
Query: 330 IVTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTA 509
+VTHV V+ +F ++ S DGHLKFWKK+ GIEF KHFR HL PI +A + G L CT
Sbjct: 72 VVTHVAVSAAEFFISGSMDGHLKFWKKKGVGIEFAKHFRSHLGPIEGLAVSIDGLLCCTI 131
Query: 510 SPEKTIKVFDVVNFDMINMISIDFEPYRVEWVHSAG 617
S + +K++DVVN+DM+ MI + + P VEWV+ G
Sbjct: 132 SNDHAVKIYDVVNYDMMAMIRLPYIPGAVEWVYKQG 167
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/48 (41%), Positives = 34/48 (70%)
Frame = +2
Query: 182 DDPENWIGPMPSEAVKPKQKKRKVLEFETLYLENLPSSETYERSFMHR 325
++ E +GP P+ P+ K+++ L+FE YL++LPS+ YE+S+MHR
Sbjct: 27 EEEEPMVGPGPA----PRGKRKRPLQFEQAYLDSLPSANMYEKSYMHR 70
>At1g24130.1 68414.m03044 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats
(PF00400);similar to beta transducin-like protein
HET-D2Y (GI:17225210) [Podospora anserina].
Length = 415
Score = 41.1 bits (92), Expect = 9e-04
Identities = 20/75 (26%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +3
Query: 333 VTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTAS 512
+ ++V+K FV T S D +K W K+++ V HL+ ++ +A + G +L + +
Sbjct: 238 INAIVVSKDGFVYTGSADKKIKVWNKKDKKHSLVATLTKHLSAVNALAISEDGKVLYSGA 297
Query: 513 PEKTIKVFD-VVNFD 554
+++I V++ ++N D
Sbjct: 298 CDRSILVWERLINGD 312
>At3g10530.1 68416.m01264 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400); BING4
(gi:3811380) {Mus musculus]; similar to hypothetical
protein GB:P40055 [Saccharomyces cerevisiae]
Length = 536
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +3
Query: 387 GHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDVVNFDMINM 566
G + WK + + +CH P+S VA + G L+ T+ E+ IK++D+ F+ +
Sbjct: 261 GTVTMWKPTSQAP--LVQMQCHPGPVSSVAFHPNGHLMATSGKERKIKIWDLRKFEEVQT 318
Query: 567 I 569
I
Sbjct: 319 I 319
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Frame = +3
Query: 270 YTWRICLHQKHMKEVSCTGXIVTHVLVTKTD-FVVTASQDGHLKFWKKQEEGI--EFVKH 440
+ W + ++ K ++ +V HV + ++ +AS D ++ W GI +FV
Sbjct: 342 FLWEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASASFDKSVRLWN----GITGQFVTV 397
Query: 441 FRCHLAPISHVAANSTGTLLCTASPEKTIKVFDV 542
FR H+ P+ V+ ++ LL + S + T+K++++
Sbjct: 398 FRGHVGPVYQVSWSADSRLLLSGSKDSTLKIWEI 431
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 37.5 bits (83), Expect = 0.011
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = +3
Query: 363 FVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDV 542
+VV+ D +K W + + F+CH PI + + LL T S ++T+K +D+
Sbjct: 105 WVVSGGLDNVVKVWDLTAG--KLLHEFKCHEGPIRSLDFHPLEFLLATGSADRTVKFWDL 162
Query: 543 VNFDMI 560
F++I
Sbjct: 163 ETFELI 168
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 36.3 bits (80), Expect = 0.025
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +3
Query: 366 VVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDVV 545
+ TAS DG WK E + H + V+ N++G+ L T S +K++ +++V+
Sbjct: 89 LATASFDGTTGIWKNYGSEFECISTLEGHENEVKSVSWNASGSCLATCSRDKSVWIWEVL 148
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 35.9 bits (79), Expect = 0.033
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 366 VVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAA 479
++T S DG L+FW+ E GI+ VK+ H + I + A
Sbjct: 1077 IITGSADGLLRFWENDEGGIKCVKNITLHSSSILSINA 1114
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 34.7 bits (76), Expect = 0.077
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 348 VTKTDFVVTASQDGHLKFWKKQEEGIEFVKH-FRCHLAPISHVAANSTGTLLCTASPEKT 524
V TD V+TAS D ++ W E+G +H + H A + V ++T +AS + T
Sbjct: 273 VGDTDLVLTASSDKTVRIWGCSEDGNYTSRHTLKDHSAEVRAVTVHATNKYFVSASLDST 332
Query: 525 IKVFDV 542
+D+
Sbjct: 333 WCFYDL 338
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 34.3 bits (75), Expect = 0.10
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +3
Query: 297 KHMKEVSCTGXIVTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVA 476
KH ++C + + V ++ ++ T S+DG LK W E+ F H+ ++ A
Sbjct: 33 KHCAGINCLDVLKSSVSNDQS-YLFTGSRDGTLKRWAFDEDATFCSATFESHVDWVNDAA 91
Query: 477 ANSTGTLLCTASPEKTIKVFD 539
TL+ + S + T+K +D
Sbjct: 92 LAGESTLV-SCSSDTTVKTWD 111
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 34.3 bits (75), Expect = 0.10
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +3
Query: 297 KHMKEVSCTGXIVTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVA 476
KH ++C + + V ++ ++ T S+DG LK W E+ F H+ ++ A
Sbjct: 33 KHCAGINCLDVLKSSVSNDQS-YLFTGSRDGTLKRWAFDEDATFCSATFESHVDWVNDAA 91
Query: 477 ANSTGTLLCTASPEKTIKVFD 539
TL+ + S + T+K +D
Sbjct: 92 LAGESTLV-SCSSDTTVKTWD 111
>At3g06880.1 68416.m00817 transducin family protein / WD-40 repeat
family protein similar to PAK/PLC-interacting protein 1
(GI:4211689) {Homo sapiens}
Length = 1115
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/89 (20%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +3
Query: 282 ICLHQ-KHMKEVSCTGXIVTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLA 458
IC++ KE+ +G L+ + + DG ++ W ++ + + H +
Sbjct: 837 ICIYNFSSGKEMHQSGSGAVTALIYHKGLLFSGFSDGSIRVWNVNKKIATLLWDIKEHKS 896
Query: 459 PISHVAANSTGTLLCTASPEKTIKVFDVV 545
++ + + TG + + S +KTI+V+ +V
Sbjct: 897 TVTCFSLSETGECVLSGSADKTIRVWQIV 925
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 426 EFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDVVNFDMI 560
+ +K FR H + ++H S G+ + TAS + T+KV+D D +
Sbjct: 338 KLLKEFRGHTSYVNHAIFTSDGSRIITASSDCTVKVWDSKTTDCL 382
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/59 (22%), Positives = 34/59 (57%)
Frame = +3
Query: 357 TDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKV 533
++ + + SQDG +K W+ + G+ ++ F H ++ ++ + G+ L + S ++T ++
Sbjct: 275 SEMLASGSQDGKIKIWRIR-TGV-CIRRFDAHSQGVTSLSFSRDGSQLLSTSFDQTARI 331
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 32.7 bits (71), Expect = 0.31
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +3
Query: 378 SQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDV 542
S DG+ W+ E V R H + + V+ N++G+LL T +K++ ++++
Sbjct: 67 SFDGNTCVWENFATDSESVSVLRGHESEVKSVSWNASGSLLATCGRDKSVWIWEI 121
>At1g54710.1 68414.m06237 expressed protein contains 3 WD-40 repeats
(PF00400) (1 weak) submitForm();
Length = 927
Score = 32.3 bits (70), Expect = 0.41
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 408 KQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPE-KTIKVFDVV 545
K E + FR H +PIS + + +GTLL TAS I VF ++
Sbjct: 366 KDFESRAIIAQFRAHTSPISALCFDPSGTLLVTASIHGNNINVFRIM 412
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 31.9 bits (69), Expect = 0.54
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Frame = +3
Query: 276 WRICLHQKHMKEVSCTGXIVTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHL 455
W + + + V T +++ T +V+AS+D +K W E + H
Sbjct: 90 WDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEADGHK 149
Query: 456 APISHV--AANSTGTLLCTASPEKTIKVFDVVNFDMINMIS 572
+S V + N+ + +AS +KT+KV+++ N + N ++
Sbjct: 150 EWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKLRNTLA 190
Score = 31.1 bits (67), Expect = 0.94
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +3
Query: 342 VLVTKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEK 521
VL + F ++ S DG L+ W E + F H + VA ++ + +AS ++
Sbjct: 70 VLSSDGQFALSGSWDGELRLWDLATG--ESTRRFVGHTKDVLSVAFSTDNRQIVSASRDR 127
Query: 522 TIKVFDVV 545
TIK+++ +
Sbjct: 128 TIKLWNTL 135
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 31.1 bits (67), Expect = 0.94
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +3
Query: 342 VLVTKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEK 521
VL + F ++ S DG L+ W E + F H + VA ++ + +AS ++
Sbjct: 70 VLSSDGQFALSGSWDGELRLWDLATG--ETTRRFVGHTKDVLSVAFSTDNRQIVSASRDR 127
Query: 522 TIKVFDVV 545
TIK+++ +
Sbjct: 128 TIKLWNTL 135
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = +3
Query: 276 WRICLHQKHMKEVSCTGXIVTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHL 455
W + + + V T +++ T +V+AS+D +K W E + H
Sbjct: 90 WDLATGETTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEGDGHK 149
Query: 456 APISHV--AANSTGTLLCTASPEKTIKVFDVVNFDMINMI 569
+S V + N+ + +AS +KT+KV+++ N + N +
Sbjct: 150 EWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKLRNSL 189
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 31.1 bits (67), Expect = 0.94
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 13/110 (11%)
Frame = +3
Query: 309 EVSCTGXIVTHVLVTKTDF----VVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVA 476
EVSC + V+ + + +A D + W + +E H+ I+ V
Sbjct: 500 EVSCIRKSASKVICCSFSYDGKLLASAGHDKKVFIWNMETLQVESTPEEHAHI--ITDVR 557
Query: 477 ANSTGTLLCTASPEKTIKVFD---------VVNFDMINMISIDFEPYRVE 599
T L T+S +KTIK++D ++ ++SIDF P + E
Sbjct: 558 FRPNSTQLATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTE 607
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.1 bits (67), Expect = 0.94
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 13/110 (11%)
Frame = +3
Query: 309 EVSCTGXIVTHVLVTKTDF----VVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVA 476
EVSC + V+ + + +A D + W + +E H+ I+ V
Sbjct: 502 EVSCIRKSASKVICCSFSYDGKLLASAGHDKKVFIWNMETLQVESTPEEHAHI--ITDVR 559
Query: 477 ANSTGTLLCTASPEKTIKVFD---------VVNFDMINMISIDFEPYRVE 599
T L T+S +KTIK++D ++ ++SIDF P + E
Sbjct: 560 FRPNSTQLATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTE 609
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.1 bits (67), Expect = 0.94
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 13/110 (11%)
Frame = +3
Query: 309 EVSCTGXIVTHVLVTKTDF----VVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVA 476
EVSC + V+ + + +A D + W + +E H+ I+ V
Sbjct: 502 EVSCIRKSASKVICCSFSYDGKLLASAGHDKKVFIWNMETLQVESTPEEHAHI--ITDVR 559
Query: 477 ANSTGTLLCTASPEKTIKVFD---------VVNFDMINMISIDFEPYRVE 599
T L T+S +KTIK++D ++ ++SIDF P + E
Sbjct: 560 FRPNSTQLATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTE 609
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.1 bits (67), Expect = 0.94
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 13/110 (11%)
Frame = +3
Query: 309 EVSCTGXIVTHVLVTKTDF----VVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVA 476
EVSC + V+ + + +A D + W + +E H+ I+ V
Sbjct: 502 EVSCIRKSASKVICCSFSYDGKLLASAGHDKKVFIWNMETLQVESTPEEHAHI--ITDVR 559
Query: 477 ANSTGTLLCTASPEKTIKVFD---------VVNFDMINMISIDFEPYRVE 599
T L T+S +KTIK++D ++ ++SIDF P + E
Sbjct: 560 FRPNSTQLATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTE 609
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.1 bits (67), Expect = 0.94
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 13/110 (11%)
Frame = +3
Query: 309 EVSCTGXIVTHVLVTKTDF----VVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVA 476
EVSC + V+ + + +A D + W + +E H+ I+ V
Sbjct: 502 EVSCIRKSASKVICCSFSYDGKLLASAGHDKKVFIWNMETLQVESTPEEHAHI--ITDVR 559
Query: 477 ANSTGTLLCTASPEKTIKVFD---------VVNFDMINMISIDFEPYRVE 599
T L T+S +KTIK++D ++ ++SIDF P + E
Sbjct: 560 FRPNSTQLATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTE 609
>At1g03380.1 68414.m00317 expressed protein
Length = 926
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 432 VKHFRCHLAPISHVAANSTGTLLCTASP-EKTIKVFDVV 545
V F+ H +PIS + + +GTLL TAS I VF ++
Sbjct: 371 VSQFKAHTSPISALCFDPSGTLLVTASVCGNNINVFQIM 409
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = +3
Query: 300 HMKEVSCTGXIVTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAA 479
H K V+ +HV + +A DG + W + V+ F H AP+ V
Sbjct: 159 HTKAVTAIDWSTSHV-----HLLASAGLDGAVYVWNVWSNDKKKVRAFLHHNAPVKDVKW 213
Query: 480 NSTGTLLCTASPEKTIKVFDV 542
+ G L + + T ++FDV
Sbjct: 214 SKQGLSLLSCGYDCTSRLFDV 234
>At5g37350.2 68418.m04487 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 385
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +2
Query: 125 MSAEKRTADDEKAAGECDGDDPENWIGPMPSEAVKPKQKKRKVLE 259
++AE+ ++E+ +GE ++ E +GP +A + K+ K+KV E
Sbjct: 314 VNAEEEEEEEEEGSGEESEEESEKELGPEDKKAAR-KEHKKKVKE 357
>At5g37350.1 68418.m04486 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 531
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +2
Query: 125 MSAEKRTADDEKAAGECDGDDPENWIGPMPSEAVKPKQKKRKVLE 259
++AE+ ++E+ +GE ++ E +GP +A + K+ K+KV E
Sbjct: 460 VNAEEEEEEEEEGSGEESEEESEKELGPEDKKAAR-KEHKKKVKE 503
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +3
Query: 363 FVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDV 542
F+V+AS D LK W E G +K H V N ++ + S ++T++++DV
Sbjct: 85 FIVSASDDKTLKLW-DVETG-SLIKTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDV 142
Query: 543 VNFDMINMISIDFEP 587
+ ++ +P
Sbjct: 143 TTGKCLKVLPAHSDP 157
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/88 (27%), Positives = 43/88 (48%)
Frame = +3
Query: 342 VLVTKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEK 521
VL + F ++ S DG L+ W G+ + F H + VA + + +AS ++
Sbjct: 70 VLSSDGQFALSGSWDGELRLW-DLAAGVS-TRRFVGHTKDVLSVAFSLDNRQIVSASRDR 127
Query: 522 TIKVFDVVNFDMINMISIDFEPYRVEWV 605
TIK+++ + + IS E +R +WV
Sbjct: 128 TIKLWNTLG-ECKYTISEGGEGHR-DWV 153
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 450 HLAPISHVAANSTGTLLCTASPEKTIKVFDV 542
HL + VA + + CT S ++TIK++DV
Sbjct: 175 HLGWVRSVAFDPSNEWFCTGSADRTIKIWDV 205
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 450 HLAPISHVAANSTGTLLCTASPEKTIKVFDV 542
HL + VA + + CT S ++TIK++DV
Sbjct: 169 HLGWVRSVAFDPSNEWFCTGSADRTIKIWDV 199
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +3
Query: 366 VVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDV 542
+ + S D + W+ + F+ + H I + S G+ + +ASP+KT++ +DV
Sbjct: 68 IASGSHDREIFLWRVHGDCKNFMV-LKGHKNAILDLHWTSDGSQIVSASPDKTVRAWDV 125
>At1g77500.1 68414.m09025 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 879
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 131 AEKRTADDEKAAGECDGDDPENWIGPMPSEAVKPKQKKR 247
A +R DDE AG P++ + +PS+ KP + KR
Sbjct: 51 AIQRFVDDEVVAGFSSSSSPDSPVLTLPSDEGKPTKHKR 89
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/81 (20%), Positives = 37/81 (45%)
Frame = +3
Query: 294 QKHMKEVSCTGXIVTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHV 473
++H K + L F+ + S D LK W+ + + + + H ++ +
Sbjct: 184 RRHKKRLWIEHADAVTALAVSDGFIYSVSWDKTLKIWRASD--LRCKESIKAHDDAVNAI 241
Query: 474 AANSTGTLLCTASPEKTIKVF 536
A ++ GT+ T S ++ I+V+
Sbjct: 242 AVSTNGTVY-TGSADRRIRVW 261
>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats; similar to
PC326 protein (GI:200241) (PIR2:S37694) [Mus
musculus];Human (H326) translated mRNA - Homo sapiens,
EMBL:HS06631
Length = 481
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/69 (21%), Positives = 38/69 (55%)
Frame = +3
Query: 360 DFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFD 539
++V + S GH+ WKK +G + V+ ++ + ++ LL + EK++K++
Sbjct: 334 EYVTSGSDCGHIFIWKK--KGGKLVRAMVGDRRVVNQLESHPHIPLLASCGIEKSVKLWT 391
Query: 540 VVNFDMINM 566
++ D++++
Sbjct: 392 PMSNDVLSL 400
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +3
Query: 333 VTHV-LVTKTDFVVTASQDGHLKFWKKQEEGIEFVKH-FRCHLAPISHVAANSTGTLLCT 506
VT V V +D V+TAS D ++ W+ +G + H A + V + T +
Sbjct: 267 VTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHSAEVRAVTVHPTNKYFVS 326
Query: 507 ASPEKTIKVFDVVNFDMINMISID 578
AS + T +D+ + + +S D
Sbjct: 327 ASLDGTWCFYDLSSGSCLAQVSDD 350
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +3
Query: 333 VTHV-LVTKTDFVVTASQDGHLKFWKKQEEGIEFVKH-FRCHLAPISHVAANSTGTLLCT 506
VT V V +D V+TAS D ++ W+ +G + H A + V + T +
Sbjct: 267 VTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHSAEVRAVTVHPTNKYFVS 326
Query: 507 ASPEKTIKVFDVVNFDMINMISID 578
AS + T +D+ + + +S D
Sbjct: 327 ASLDGTWCFYDLSSGSCLAQVSDD 350
>At5g67050.1 68418.m08453 lipase class 3 family protein similar to
lipase precursor [Rhizopus arrhizus] GI:6942320;
contains Pfam profile PF01764: Lipase
Length = 477
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 176 DGDDPENWIGPMPSEAVKPKQKKRKVLEFETLYLENLPSSETYERSFMHR 325
D D+P ++ P E ++P + R + + ++ SSET E SF HR
Sbjct: 6 DDDEPRGYLILRPEE-LRPWELVRLLFSGDIEKPRSVDSSETEEHSFRHR 54
>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to photomorphogenesis repressor PnCOP1
(GI:11127996) [Ipomoea nil]
Length = 385
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +3
Query: 333 VTHVLVTKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAAN--STGTLLCT 506
VT+ + +VT S DG LK W + G V+ +R H+ + V + G L+ +
Sbjct: 259 VTYARFMDSHTIVTGSTDGSLKQW-DIDNGRRVVRTYRGHVNSRNFVGLSVWRHGGLVVS 317
Query: 507 ASPEKTIKVFD 539
S + V+D
Sbjct: 318 GSENNQVFVYD 328
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8
WD-40 repeats (PF00400) (2 weak)
Length = 1108
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/61 (21%), Positives = 23/61 (37%)
Frame = +3
Query: 351 TKTDFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIK 530
T + + +DG +KFW + L + H+ N G LL + + K
Sbjct: 596 TSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDGNLLAVTTADNGFK 655
Query: 531 V 533
+
Sbjct: 656 I 656
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Frame = +3
Query: 270 YTWRICLHQKHMKEV-------SCTGXIVTHVLVTKTDFVVTASQDGHLKFWKKQEEGIE 428
Y WR+ ++ M E + G I+ +L ++ TAS D +K W +G +
Sbjct: 187 YVWRLLRGKQTMTEFEPLHKLQAHNGHILKCLLSPANKYLATASSDKTVKIW--NVDGFK 244
Query: 429 FVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDV 542
K H + + G L TAS + T +++ +
Sbjct: 245 LEKVLTGHQRWVWDCVFSVDGEFLVTASSDMTARLWSM 282
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 360 DFVVTASQDGHLKFWKKQEEGIEFVKHFRCHLAPISHVAANS-TGTLLCTASPEKTIKVF 536
D +AS D L+ W +E G + H I N +L T+S +KT+KV+
Sbjct: 163 DVFASASGDCTLRIWDVREPGSTMI--IPAHDFEILSCDWNKYDDCILATSSVDKTVKVW 220
Query: 537 DVVNF 551
DV ++
Sbjct: 221 DVRSY 225
>At5g66240.2 68418.m08345 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 331
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 441 FRCHLAPISHVAANSTGTLLCTASPEKTIKVFDVVNFDMINMIS 572
FR + IS + + T T + TAS + +I+++DV + + I+
Sbjct: 29 FRDYNCRISSIDFHKTSTCMVTASDDDSIRLYDVASATCLKTIN 72
>At5g66240.1 68418.m08344 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 328
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 441 FRCHLAPISHVAANSTGTLLCTASPEKTIKVFDVVNFDMINMIS 572
FR + IS + + T T + TAS + +I+++DV + + I+
Sbjct: 26 FRDYNCRISSIDFHKTSTCMVTASDDDSIRLYDVASATCLKTIN 69
>At5g54730.1 68418.m06815 expressed protein
Length = 763
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 432 VKHFRCHLAPISHVAANSTGTLLCTASPE-KTIKVFDVV 545
+ F+ H +PIS + + +G LL TAS + I VF ++
Sbjct: 340 ITQFKAHKSPISALCFDQSGLLLVTASIQGHNINVFRIM 378
>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
trafficking regulator - Bos taurus, EMBL: AF114785
Length = 3471
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/87 (17%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Frame = +3
Query: 366 VVTASQDGHLKFWKKQEEG------IEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTI 527
VVT ++DG + W+ ++G + K H A + + + ++ ++S + T+
Sbjct: 3289 VVTGAEDGLVSVWRVSKDGPRGSRRLRLEKSLCAHTAKVICLRVSQPYMMIASSSDDCTV 3348
Query: 528 KVFDVVNFDMINMISIDFEPYRVEWVH 608
++D+ + + + P V +++
Sbjct: 3349 IIWDLSSLSFVRQLPNFSVPVTVVYIN 3375
>At3g30710.1 68416.m03897 hypothetical protein similar to
Arginine-tRNA-protein transferase 1 (EC
2.3.2.8)(R-transferase 1) (Arginyltransferase 1)
(Arginyl-tRNA--protein transferase 1)(SP:Q9Z2A5) {Mus
musculus}; similar to MRP homologs in mycobacteria
(SP:P53382), which belong to the MR?/NBP35 family of
ATP-binding proteins.
Length = 523
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +3
Query: 399 FWKKQEEGIEFVKHFRCHLAPISHVAANSTGTLLCTASPEKTIKVFDVVNFDMINMISID 578
+ + +E IEF H L + A + GT +A PE I F V+ ++ D
Sbjct: 144 YTRAREVNIEFGYHELLQLCQVKTNARSHQGTYYISACPESLILGFFWVDHHSVS----D 199
Query: 579 FEPYRV 596
F+P R+
Sbjct: 200 FDPARI 205
>At1g53510.1 68414.m06068 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK18) mitogen-activated protein
kinase (MAPK)(AtMPK18), PMID:12119167
Length = 603
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +2
Query: 188 PENWIGPMPSEAVKPKQKKRKVLEFETLYLENLPSSETYERSFMHRXYCYTR 343
P IGP P V P + +V+E Y E Y RS + +CY R
Sbjct: 447 PTKSIGPPPR--VPPSGRPGRVVESSVSYENGRNLKEAYFRSAVSSPHCYFR 496
>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 471
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +3
Query: 279 RICLHQKHMKEVSCTGXIVTHVLVTKTDFVVTASQDGHLKFWKKQEEGIE 428
R+ K T V ++VT+ + V T QDG ++ W+ ++ E
Sbjct: 157 RVWKDLKDFSGFKSTSGFVKAIVVTRDNRVFTGHQDGKIRVWRGSKKNPE 206
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 27.9 bits (59), Expect = 8.8
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +3
Query: 345 LVTKTDFVVTASQDGHLKFWKKQEEGIEFVKH---FRCHLAPISHVAANSTGTLLCTASP 515
LVT V + S DG + FW+ ++ + +KH F+ H + +AA G LL + +
Sbjct: 229 LVTSHMAVYSGSSDGAVNFWEMGDK--KLLKHCEVFKKHRLAVLCIAA--AGKLLFSGAA 284
Query: 516 EKTIKVF 536
+K I V+
Sbjct: 285 DKKICVW 291
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,030,585
Number of Sequences: 28952
Number of extensions: 282891
Number of successful extensions: 854
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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