BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_O24 (845 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo... 29 0.83 SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 27 2.5 SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 27 4.4 SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 27 4.4 SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 26 5.8 >SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizosaccharomyces pombe|chr 1|||Manual Length = 281 Score = 29.1 bits (62), Expect = 0.83 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = -3 Query: 552 LDNNSGYHENIANDSS*DDESENYRGDSHKDERRDVTARGVACCAVDRSVA 400 +DN Y I ND S + E E YR + + + ARG+ AV R ++ Sbjct: 33 IDNTKDYRVIIINDESLNIEKETYR-----ESKNEKAARGLLYSAVQRELS 78 >SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1000 Score = 27.5 bits (58), Expect = 2.5 Identities = 10/31 (32%), Positives = 22/31 (70%) Frame = +1 Query: 475 TSVVLALIILATIVGNVFVIAAIIIERNLQK 567 + ++ A +LA+++GNV + ++IE NL++ Sbjct: 746 SGILAARDVLASLIGNVVLPNTLVIEENLEQ 776 >SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit Apc5 |Schizosaccharomyces pombe|chr 1|||Manual Length = 737 Score = 26.6 bits (56), Expect = 4.4 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%) Frame = -2 Query: 316 STRLIVETHSFYCRSSFWRS-----LSKAVDDCNHFTIILSLKMLS 194 ST + SF C + R LSKA+D+ NH L LK L+ Sbjct: 484 STAEVQSQRSFQCAHLYGREKTFIYLSKAIDEKNHMDATLYLKNLN 529 >SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual Length = 629 Score = 26.6 bits (56), Expect = 4.4 Identities = 10/28 (35%), Positives = 19/28 (67%) Frame = +1 Query: 232 YSRRQPLKVNARRTSDSRMNASQLSSEL 315 YS ++PLK+N+ + S S + ++S+ L Sbjct: 91 YSNKEPLKINSWKKSSSHPKSKEVSNGL 118 >SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces pombe|chr 3|||Manual Length = 1690 Score = 26.2 bits (55), Expect = 5.8 Identities = 15/44 (34%), Positives = 17/44 (38%) Frame = +2 Query: 650 MKLVKVGSWVPSSATCGPQATYSAVPHRYXTWSLSPLTGXGPXP 781 M L KVG WV S T + R+ SL P G P Sbjct: 175 MDLYKVGQWVRVSVTALGSENTTKTGKRHIELSLKPQDANGSAP 218 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,940,064 Number of Sequences: 5004 Number of extensions: 52413 Number of successful extensions: 134 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 129 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 133 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 418457710 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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