Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O24
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    29   0.83 
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   2.5  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    27   4.4  
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             27   4.4  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   5.8  

>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 552 LDNNSGYHENIANDSS*DDESENYRGDSHKDERRDVTARGVACCAVDRSVA 400
           +DN   Y   I ND S + E E YR     + + +  ARG+   AV R ++
Sbjct: 33  IDNTKDYRVIIINDESLNIEKETYR-----ESKNEKAARGLLYSAVQRELS 78


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +1

Query: 475 TSVVLALIILATIVGNVFVIAAIIIERNLQK 567
           + ++ A  +LA+++GNV +   ++IE NL++
Sbjct: 746 SGILAARDVLASLIGNVVLPNTLVIEENLEQ 776


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = -2

Query: 316 STRLIVETHSFYCRSSFWRS-----LSKAVDDCNHFTIILSLKMLS 194
           ST  +    SF C   + R      LSKA+D+ NH    L LK L+
Sbjct: 484 STAEVQSQRSFQCAHLYGREKTFIYLSKAIDEKNHMDATLYLKNLN 529


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 232 YSRRQPLKVNARRTSDSRMNASQLSSEL 315
           YS ++PLK+N+ + S S   + ++S+ L
Sbjct: 91  YSNKEPLKINSWKKSSSHPKSKEVSNGL 118


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = +2

Query: 650 MKLVKVGSWVPSSATCGPQATYSAVPHRYXTWSLSPLTGXGPXP 781
           M L KVG WV  S T       +    R+   SL P    G  P
Sbjct: 175 MDLYKVGQWVRVSVTALGSENTTKTGKRHIELSLKPQDANGSAP 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,064
Number of Sequences: 5004
Number of extensions: 52413
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)