Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O24
         (845 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410...    28   8.1  

>01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,
            4100974-4101107,4101337-4101435,4102619-4102994,
            4103883-4104337,4104419-4107409
          Length = 1460

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 244  VDDCNHFTIILSLKMLSHISQFTHHQSPPIVEKHAELV 131
            ++DC   T +  +K L H+++ T  +SP  +E    LV
Sbjct: 1278 IEDCLELTTLKCMKTLIHLTELTVLRSPKFMEGWKNLV 1315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,404,213
Number of Sequences: 37544
Number of extensions: 352689
Number of successful extensions: 898
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)