Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O24
         (845 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04570.1 68416.m00485 DNA-binding protein-related contains Pf...    29   3.9  
At5g08160.2 68418.m00953 serine/threonine protein kinase, putati...    28   6.8  
At5g08160.1 68418.m00952 serine/threonine protein kinase, putati...    28   6.8  

>At3g04570.1 68416.m00485 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 315

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 546 NNSGYHENIANDSS*DDESENYRGDSHKDERRDVTA 439
           NN  +H+ + N+++ DD+ +N  GD H+     V A
Sbjct: 43  NNHHHHQEVDNNNN-DDDRDNLSGDDHEPREGAVEA 77


>At5g08160.2 68418.m00953 serine/threonine protein kinase, putative
           identical to serine/threonine protein kinase
           [Arabidopsis thaliana] gi|2109293|gb|AAB69123
          Length = 311

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 698 GPQATYSAVPHRYXTWSLSPLTGXGP 775
           GP+A+Y    H++ TW L P     P
Sbjct: 268 GPKASYPEALHQFVTWMLQPQAAVRP 293


>At5g08160.1 68418.m00952 serine/threonine protein kinase, putative
           identical to serine/threonine protein kinase
           [Arabidopsis thaliana] gi|2109293|gb|AAB69123
          Length = 347

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 698 GPQATYSAVPHRYXTWSLSPLTGXGP 775
           GP+A+Y    H++ TW L P     P
Sbjct: 304 GPKASYPEALHQFVTWMLQPQAAVRP 329


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,424,985
Number of Sequences: 28952
Number of extensions: 278363
Number of successful extensions: 741
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)