Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_O23
(849 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.) 241 4e-64
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.17
SB_5574| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.39
SB_25949| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.68
SB_34973| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 31 0.89
SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06) 31 1.6
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041) 30 2.1
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9) 30 2.7
SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6) 29 3.6
SB_51968| Best HMM Match : PT (HMM E-Value=0.54) 29 3.6
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69) 29 3.6
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_38025| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9) 29 4.8
SB_35983| Best HMM Match : Ice_nucleation (HMM E-Value=0.42) 29 4.8
SB_21973| Best HMM Match : XPG_N (HMM E-Value=0.013) 29 4.8
SB_20744| Best HMM Match : CH (HMM E-Value=0.92) 29 4.8
SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8) 29 6.3
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029) 28 8.3
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13) 28 8.3
SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029) 28 8.3
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15) 28 8.3
>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 241 bits (591), Expect = 4e-64
Identities = 123/149 (82%), Positives = 134/149 (89%)
Frame = +1
Query: 154 NNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 333
+ P Y FFGVMGA +A++FSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII
Sbjct: 5 DQPSYVAFFGVMGATAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 64
Query: 334 AIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQ 513
AIYGLVVAVLI ++ + +Y LYK F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQ
Sbjct: 65 AIYGLVVAVLIGSSISK--DYTLYKSFLDLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQ 122
Query: 514 QPRLFVGMILILIFAEVLGLYGLIVAIYL 600
QPRLFVGMILILIFAEVLGLYGLIVA+ L
Sbjct: 123 QPRLFVGMILILIFAEVLGLYGLIVALIL 151
>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1574
Score = 33.9 bits (74), Expect = 0.17
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -3
Query: 637 REWCVF---RAFILCTGRWRR*VRKDPILQRK*E*ESFRRIT*AAEQYHARLHLP 482
R WCV+ R+ I CT RW R V P + + +S RR+ E + L+ P
Sbjct: 931 RGWCVYHMGRSLIACTRRWMRKVACSPSKETRPHRQSSRRLASQQESQQSLLNAP 985
>SB_5574| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 32.7 bits (71), Expect = 0.39
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -1
Query: 354 HDQTVDGNNTRHDDRNDRLHDQLRP---HHRHGGNTSS*LGSPIGSSQGAEDDSRRRPHN 184
HD T T D + +HD R + RHG ++ + + + + D +R PHN
Sbjct: 304 HDTTRTARYTTRLDTDRTIHDTARHGPLYTRHGSIRTAQYTTRLDTDRSIHDTARYGPHN 363
Query: 183 SKEGS 169
+++GS
Sbjct: 364 TRQGS 368
>SB_25949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 31.9 bits (69), Expect = 0.68
Identities = 20/52 (38%), Positives = 22/52 (42%)
Frame = -1
Query: 360 DSHDQTVDGNNTRHDDRNDRLHDQLRPHHRHGGNTSS*LGSPIGSSQGAEDD 205
DSHD DG + HDD D HD H G T S I S + DD
Sbjct: 36 DSHDDIDDGTDD-HDDTGD--HDGTDDHDDTGDGTDSHADDDIDDSTDSHDD 84
>SB_34973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 31.5 bits (68), Expect = 0.89
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Frame = +1
Query: 40 LGHICLCKSSFVE*VCADSHHSF--WDL*ILPHLTNKMAENNPIYGPFFGVMGAASAIIF 213
L H+ L KS + C DS HSF W +L + N P+ P A S +
Sbjct: 285 LNHLVLPKSRKKKISCVDSLHSFAQWQNVMLETIYTNQVLNFPLAEP------AVSGLYG 338
Query: 214 SALGAAYGTAKSGTGIAAMSVMRP--ELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEP 387
S + A T + G A S++ P + + ++ VM GI + L A + ++P
Sbjct: 339 SGVAALGITEQLQKGQEASSIVHPSDHDLYQRLMDAVMEGIHKVESLSSASKKESSKEKP 398
Query: 388 AN 393
N
Sbjct: 399 KN 400
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 31.5 bits (68), Expect = 0.89
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = -1
Query: 378 EGTSNQDSHDQTVDGNNTRHDDRNDRLHDQLRPHHRHGGNTSS*LGSPIGSSQGAEDDSR 199
E +++ HD D N+ R R + + H GN S+ GS I +S G +
Sbjct: 840 EKHTSRPRHDSKSDKKNSDDKHRRHRRRREKKKQRHHSGNDST--GSDIPASPGIANSPA 897
Query: 198 RRPHNSK 178
RP S+
Sbjct: 898 SRPSPSR 904
>SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 31.5 bits (68), Expect = 0.89
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 424 GAGLAVGFSGLAAGFAIGIVG 486
GAG+ VGF LA G +G+VG
Sbjct: 46 GAGMTVGFCNLACGICVGLVG 66
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 306 HSCRHGGYYCHLRSGRGCPDCWCPPGASQLPPLQRV 413
+ CR+ G C + R P C CPPG QRV
Sbjct: 2981 YKCRYQGEVC-VTDSRNVPRCVCPPGCPPAEVSQRV 3015
>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
Length = 295
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 545 IRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAP 423
++I+P N + PR P + T P P P PT P P
Sbjct: 205 VKILPGNGVVPTQAPRPPTTQTPPTKAPTDPPVPPTNPPVP 245
>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 471 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 340
G+ +T SYS S+QV +PF V +QD H+QT+
Sbjct: 713 GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQPIKQHQDKHNQTL 756
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 471 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 340
G+ +T SYS S+QV +PF V +QD H+QT+
Sbjct: 44 GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQLIKQHQDKHNQTL 87
>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
Length = 1155
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 497 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 405
TPA PT+PMA A + P+ PA PL
Sbjct: 1095 TPALPTIPMAPSGAPAKTPSVAPAAPSPRPL 1125
>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
Length = 439
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = -3
Query: 505 YHARLHLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPGGHQQSGQ--PRPDRRW 335
YHA+ + +C ++P +L Q S C PGGHQ Q R RW
Sbjct: 264 YHAKNQVVKCYQPGKEPGGHLLPTYQAKSQAVKCYYIPGKEPGGHQAKNQAVTRQRTRW 322
>SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 324 RHDDR-NDRLHDQLRPHHRHGGNTSS*LGSPIGSSQGAEDDSRRRPHNSKEGS 169
+H DR ND + H RHG T S SP G S+ ++D + S+E S
Sbjct: 175 QHVDRENDMELSSRKTHGRHGERTESRFHSP-GRSKSSDDPAEPAKDQSRETS 226
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 490 HLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPG-GHQQSGQ 356
++ +++ Q +Q +L NQ PS T+ GGS G GH GQ
Sbjct: 2347 YVSHTVFKREQDEQLLLWLNQRPSDWTMTWGGSGTIYGWGHNHRGQ 2392
>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
Length = 156
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 494 PASPTMPMAKPAARPENPTAKPAPK 420
PA+P P A PAA P PTA PA +
Sbjct: 52 PAAPVTPTAAPAA-PVTPTAAPAAR 75
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -2
Query: 494 PASPTMPMAKPAARPENPTAKPA 426
PA+P P A PAAR PTA PA
Sbjct: 62 PAAPVTPTAAPAAR-VTPTAAPA 83
>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
Length = 514
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -2
Query: 572 RPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAPKWMNPL 405
+P T+ K R PT +L + +PT AKP PT +P K PL
Sbjct: 135 KPKTTVKRRPTERPTKSLLPEEEEKERQTPTPTKAKPTTIKRRPTERPTKKPTKPL 190
>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 306 HSCRHGGYYCHLRSGRGCPDCW 371
+SC G YYC++ RG DCW
Sbjct: 348 YSCNSGHYYCYV---RGSNDCW 366
>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
Length = 404
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 494 PASPTMPMAKPAARPENPTAKPAPK 420
PA+P P A PAA P PTA PA +
Sbjct: 209 PAAPVTPTAAPAA-PVTPTAAPAAR 232
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -2
Query: 494 PASPTMPMAKPAARPENPTAKPA 426
PA+P P A PAAR PTA PA
Sbjct: 219 PAAPVTPTAAPAAR-VTPTAAPA 240
>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 29.1 bits (62), Expect = 4.8
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 7/121 (5%)
Frame = -1
Query: 516 LLSSTTHACISHDAY---GETGSQTRESYSQTSTQVDEPFVKGVVG--WLLEGTSNQDSH 352
L + TH HD + T TR T ++ G L T+ D+H
Sbjct: 495 LYDTHTHETTRHDTHLHDMHTHETTRHDTHLHDTTENDTHPHDTTGNDTYLHDTTENDTH 554
Query: 351 DQTVDGNNTRHDDRNDRLHDQLRPHHRHGGNTSS*LGSPIGSSQGAED--DSRRRPHNSK 178
GN+T+ +D ++ RPH G +T L G+ D ++ +PH++
Sbjct: 555 PHDTTGNDTQ---LHDTTGNKTRPHDTTGNDTH--LHDTTGNDTRPHDTTENDTQPHDTT 609
Query: 177 E 175
E
Sbjct: 610 E 610
>SB_38025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 11 MTHSVESCKAWAIFVCAKVVSWSECVQIVITAFGTCK--YSHI*QTKWLKIIQSTDPSLE 184
++ +V C+ + CA V SW + + I++ A G C+ + I + L + ++
Sbjct: 22 LSSAVHGCRTARVIDCASVPSWPDGLSIIL-ARGKCRIALASIQAGRGLYSREKKTLVMK 80
Query: 185 LWGRR 199
+WG+R
Sbjct: 81 IWGKR 85
>SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)
Length = 233
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 533 PTNNLGC*AVPRTPASP--TMPMAKPAARPENPTAKPAP 423
P+NN G A P TPA+P M +A P+ T P P
Sbjct: 87 PSNNFGTPATPATPATPAHNMGVAGPSGMATPGTFIPPP 125
>SB_35983| Best HMM Match : Ice_nucleation (HMM E-Value=0.42)
Length = 216
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = -1
Query: 354 HDQTVDGNNTRHDDRNDRLHDQLR--PHH-RHGGNTSS*LGSPIGSSQGAEDDSRRRPHN 184
HD ++T D HD R PH+ RHG ++ + + + + D +R P
Sbjct: 65 HDTNSTIHDTARQGPRDTRHDTARYGPHNTRHGSTRTALYTTRLDTDRTIHDKARHGPLG 124
Query: 183 SKEGSV 166
++ GS+
Sbjct: 125 TRHGSI 130
>SB_21973| Best HMM Match : XPG_N (HMM E-Value=0.013)
Length = 611
Score = 29.1 bits (62), Expect = 4.8
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Frame = +1
Query: 40 LGHICLCKSSFVE*VCADSHHSF--WDL*ILPHLTNKMAENNPIYGPFFGVMGAASAIIF 213
L H+ L +S + C DS HSF W +L + N P+ P A S +
Sbjct: 469 LNHLVLPESREKKISCVDSLHSFAQWQNVMLETIYTNQVLNFPLAEP------AVSGLYG 522
Query: 214 SALGAAYGTAKSGTGIAAMSVMRP--ELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEP 387
S + A T + G A S++ P + + + VM GI + L A + ++P
Sbjct: 523 SGVAALGITEQLQKGQKASSIVHPLDHDLYQRLRDAVMEGICKVESLSSASKKESSKEKP 582
Query: 388 AN 393
N
Sbjct: 583 KN 584
>SB_20744| Best HMM Match : CH (HMM E-Value=0.92)
Length = 1103
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1
Query: 348 QTVDGNNTRHDDRNDRLHDQLRPHHRHGGNTSS*LGSPIGSSQGAEDD 205
+T+ + RN RPH +HGG T S G P+ +S + D
Sbjct: 569 RTLSATGCSYQSRNIPSFSTSRPHDKHGGQTYS-SGLPVSNSIHQDKD 615
>SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 669 IMSIEARSTGDGSGVCSGRLFCVQVDGDDKSVKTQYFSENKNKN 538
+ ++ +STGD S VC G +F D K + Q E K N
Sbjct: 15 LSALNKKSTGDKSWVCFGNMFMKLPDSKTKDMIIQGLQEVKGFN 58
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = -2
Query: 506 VPRTPAS-PTMPMAKPAARPENPTAKPAPKWMNP 408
+P TP P P P RP PT +P P P
Sbjct: 1354 IPSTPRPRPPTPPRPPTPRPRPPTPRPGPPTPRP 1387
>SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8)
Length = 355
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = -2
Query: 530 TNNLGC*AVPRTPASPTMPMAKPA--ARPENPTAKPAPKWMNPL*RG*LAGSWRAPAIRT 357
+NN G A P TPA+ +P+A P+ A P T PAP + P A + ++
Sbjct: 220 SNNFGTPATPATPAN-GVPIAGPSGMATPGAFTPPPAPVFTPPPPYRTTAKPFPKMSLTP 278
Query: 356 ATTRP*MAIIPAMTTGMIDFMISS 285
+P + P +T ++ ++ S
Sbjct: 279 TPKKPPVPKKPVLTPAQLEGLLKS 302
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/73 (20%), Positives = 31/73 (42%)
Frame = -1
Query: 381 LEGTSNQDSHDQTVDGNNTRHDDRNDRLHDQLRPHHRHGGNTSS*LGSPIGSSQGAEDDS 202
+ +N D++ D NN + D N+ ++ ++ + N S S S ++++S
Sbjct: 581 INNANNNDNNSDNNDNNNDNNSDNNNNNNNNNNNNNNNNDNNSD-NNSDNNSDNNSDNNS 639
Query: 201 RRRPHNSKEGSVD 163
N+ E D
Sbjct: 640 DNNNDNNSERGAD 652
>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 346
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 497 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 405
TPA PT+P A A + P+ PA PL
Sbjct: 286 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 316
>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
Length = 347
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 497 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 405
TPA PT+P A A + P+ PA PL
Sbjct: 290 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 320
>SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Frame = -1
Query: 582 KSVKTQYFSENKNKNHSDE*PRLLSSTTHACISHDAYGETGSQTRESYSQTSTQVDEPFV 403
+++ + + ++N NH++ +S H ++ + S S T+T P
Sbjct: 170 QNINSSNNNNDQNNNHNNNNNN--NSNNHNNHKNNNHNNNNSNNNNSNDHTATTTT-PTA 226
Query: 402 KGVVGWLLEG---TSNQDSHDQTVDGNNTRHDDRNDRLHDQLRPHHRHGGNTSS 250
K +L S+ +++DQ D NN +++ N+ + + H + N +
Sbjct: 227 KTTPATVLVQQNINSSNNNNDQNNDHNNNNNNNNNNYNNHNINHSHNNSNNNKN 280
>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 1026
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 497 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 405
TPA PT+P A A + P+ PA PL
Sbjct: 966 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 996
>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
Length = 1774
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = -1
Query: 405 VKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDRLHDQLRPHH--RHGGNTSS*LGSPI 232
VKG++ EG ++ S ++ T+ RN + R + GG+ P
Sbjct: 781 VKGILTATKEGDGDRQSSSRSTQPE-TKRGRRNKDARKETRSDKSGKKGGDAGDDPSDPD 839
Query: 231 GSSQGAEDDSRRRPHNSK 178
+E+D R+ HN K
Sbjct: 840 EEKDESEEDQERKRHNKK 857
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,512,000
Number of Sequences: 59808
Number of extensions: 665063
Number of successful extensions: 2218
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2171
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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