Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O22
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    27   4.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   4.7  

>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -3

Query: 467 TPRKHTWRDRLSPRNGVRRRKTFRHMI-LHKH-YTVLLP 357
           T   H W DRLSP     + K F H   +++H  T L P
Sbjct: 618 TQLMHQWGDRLSPSQVAEKVKRFFHYYGINRHKMTTLTP 656


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
 Frame = -2

Query: 441  PPLTTQRRPAPQDIP---AHDSAQALHGTPPERTL*KNISPLS*SLGLQ-AAGDREAPVQ 274
            PP++  R   PQ  P   A  S+ A+   P   +  ++ +  S S  L   AGDR     
Sbjct: 1062 PPVSATRPQIPQPPPVSTALPSSSAVSRPPIATSAGRSSTAASTSAPLTYPAGDRSHIPG 1121

Query: 273  HSARVMRNADTELQRPARSIPTQ 205
            +   +    + ELQR ++S+P Q
Sbjct: 1122 NLRPIYEMLNAELQRVSQSLPPQ 1144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,412
Number of Sequences: 5004
Number of extensions: 37346
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)