BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_O22 (892 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|... 27 4.7 SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 4.7 >SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr 3|||Manual Length = 700 Score = 26.6 bits (56), Expect = 4.7 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%) Frame = -3 Query: 467 TPRKHTWRDRLSPRNGVRRRKTFRHMI-LHKH-YTVLLP 357 T H W DRLSP + K F H +++H T L P Sbjct: 618 TQLMHQWGDRLSPSQVAEKVKRFFHYYGINRHKMTTLTP 656 >SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1224 Score = 26.6 bits (56), Expect = 4.7 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Frame = -2 Query: 441 PPLTTQRRPAPQDIP---AHDSAQALHGTPPERTL*KNISPLS*SLGLQ-AAGDREAPVQ 274 PP++ R PQ P A S+ A+ P + ++ + S S L AGDR Sbjct: 1062 PPVSATRPQIPQPPPVSTALPSSSAVSRPPIATSAGRSSTAASTSAPLTYPAGDRSHIPG 1121 Query: 273 HSARVMRNADTELQRPARSIPTQ 205 + + + ELQR ++S+P Q Sbjct: 1122 NLRPIYEMLNAELQRVSQSLPPQ 1144 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,550,412 Number of Sequences: 5004 Number of extensions: 37346 Number of successful extensions: 65 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 65 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 448490560 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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