Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O22
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0438 - 17737040-17737122,17737373-17737496,17737897-177381...    33   0.23 
04_01_0333 - 4391571-4392289,4393048-4393159                           32   0.70 
04_04_1596 + 34684943-34686340,34688085-34688175,34688290-346883...    30   2.8  
09_06_0081 + 20745627-20748144,20748211-20748308                       29   5.0  
03_05_0786 + 27691451-27691688,27692376-27692479,27692600-276926...    29   5.0  
12_02_0735 - 22636835-22639502,22639755-22640734                       29   6.6  
09_06_0090 + 20787453-20787507,20787600-20788296,20788949-20789189     29   6.6  

>11_04_0438 -
           17737040-17737122,17737373-17737496,17737897-17738182,
           17738265-17738397,17738742-17738953,17739455-17739816,
           17739907-17739937,17744738-17745111
          Length = 534

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = +2

Query: 188 AAAGICWVGMDRAGRCSSVSALRMTRAECCTGASRSPAAXSPKDYDSGEIFFYKVLSGGV 367
           AAA +  V + R     S +A  +TR+   TG++  P A +P  +    I    V  GG 
Sbjct: 17  AAAEVAAVCVGRGAAARSAAASVVTRSRPVTGSAVEPPASTPDTHHRSRIRVRGVRIGGR 76

Query: 368 PCNACAESC 394
            C   A  C
Sbjct: 77  MCRPLASPC 85


>04_01_0333 - 4391571-4392289,4393048-4393159
          Length = 276

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 16/29 (55%), Positives = 17/29 (58%)
 Frame = +2

Query: 236 SSVSALRMTRAECCTGASRSPAAXSPKDY 322
           S+  A R  R  CCTGA  SPAA  P DY
Sbjct: 210 SACDAYRSARY-CCTGAYGSPAACGPTDY 237


>04_04_1596 +
           34684943-34686340,34688085-34688175,34688290-34688354,
           34688530-34688581,34688747-34688829,34688942-34689035,
           34689468-34690051
          Length = 788

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 498 LPHTALTXRHDAAQTHLARPPLTTQRRPAPQDIPAHDSAQALHGTPP 358
           LPH +      + ++    PP ++  RPAP    A +   + HG PP
Sbjct: 118 LPHPSPRVSSSSPRSPTPSPPSSSPPRPAPVVAAAEEPRSSGHGKPP 164


>09_06_0081 + 20745627-20748144,20748211-20748308
          Length = 871

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -2

Query: 504 PSLPHTALTXRHDAAQT---HLARPPLTTQRRPAPQDIPAHDSAQALHGTPP 358
           P +P T+L  R  A      H+  PP+ T   PAP        A ++H TPP
Sbjct: 485 PHVPTTSLALRSPAPHLRVRHMPAPPVPTPPAPAPPVSTLPSPAPSVH-TPP 535


>03_05_0786 +
           27691451-27691688,27692376-27692479,27692600-27692671,
           27693231-27693404,27693603-27693726,27695154-27695200,
           27695381-27695593
          Length = 323

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -2

Query: 465 AAQTHLARPPLTTQRRPAPQDI---PAHDSAQALHG 367
           +AQTH   P LT  R P P +I   P + +A+  HG
Sbjct: 139 SAQTHFQLPGLTHSRMPLPLEISEEPVYVNAKQYHG 174


>12_02_0735 - 22636835-22639502,22639755-22640734
          Length = 1215

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -3

Query: 377 HYTVLLPREPCRRIFXXXXXXXXXXXRE-IERPQYSIQRGSCATQTLNCSAR 225
           HYTV +P  P R               E + RPQ S   G+  T  LNC+ R
Sbjct: 81  HYTVHIPPTPDRATASVASEAEAAAEAEEVHRPQRSYISGTIFTGGLNCATR 132


>09_06_0090 + 20787453-20787507,20787600-20788296,20788949-20789189
          Length = 330

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = +2

Query: 185 PAAAGICWVGMDRAG-RCSSVSALRMTRAECCTGASRSPAAXSPKDY 322
           P  A +   G D AG  C S      T   CC GA  +PA   P  Y
Sbjct: 163 PCPADLKVAGADGAGIACRSACEAFGTPEYCCNGAFGTPATCRPSAY 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,052,475
Number of Sequences: 37544
Number of extensions: 389109
Number of successful extensions: 1055
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)