BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_O22 (892 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g13300.2 68416.m01675 transducin family protein / WD-40 repea... 30 1.8 At3g13300.1 68416.m01674 transducin family protein / WD-40 repea... 30 1.8 At5g13860.1 68418.m01620 tumour susceptibility gene 101 (TSG101)... 29 5.5 At1g75050.1 68414.m08717 thaumatin-like protein, putative / path... 29 5.5 At1g75030.1 68414.m08715 pathogenesis-related thaumatin family p... 29 5.5 >At3g13300.2 68416.m01675 transducin family protein / WD-40 repeat family protein contains 2 WD-40 repeats (PF00400); autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens] and autoantigen locus HSU17474 (GI:596134) [Homo sapiens] Length = 1309 Score = 30.3 bits (65), Expect = 1.8 Identities = 28/102 (27%), Positives = 41/102 (40%) Frame = -2 Query: 501 SLPHTALTXRHDAAQTHLARPPLTTQRRPAPQDIPAHDSAQALHGTPPERTL*KNISPLS 322 S P L ++D Q H A P ++ Q P Q S+ A P+RTL PL+ Sbjct: 3 SSPGPFLHNQYD--QQHYAPPGISAQPSPVTQQQQDVSSSSAATNLHPQRTLSYPTPPLN 60 Query: 321 *SLGLQAAGDREAPVQHSARVMRNADTELQRPARSIPTQQIP 196 LQ+ P H ++ N + A P+ Q+P Sbjct: 61 ----LQSPRSNHNPGTHILALLNNTNNGAP-VANQEPSHQLP 97 >At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat family protein contains 2 WD-40 repeats (PF00400); autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens] and autoantigen locus HSU17474 (GI:596134) [Homo sapiens] Length = 1344 Score = 30.3 bits (65), Expect = 1.8 Identities = 26/100 (26%), Positives = 38/100 (38%) Frame = -2 Query: 495 PHTALTXRHDAAQTHLARPPLTTQRRPAPQDIPAHDSAQALHGTPPERTL*KNISPLS*S 316 P T + Q H A P ++ Q P Q S+ A P+RTL PL+ Sbjct: 38 PPTGPFLHNQYDQQHYAPPGISAQPSPVTQQQQDVSSSSAATNLHPQRTLSYPTPPLN-- 95 Query: 315 LGLQAAGDREAPVQHSARVMRNADTELQRPARSIPTQQIP 196 LQ+ P H ++ N + A P+ Q+P Sbjct: 96 --LQSPRSNHNPGTHILALLNNTNNGAP-VANQEPSHQLP 132 >At5g13860.1 68418.m01620 tumour susceptibility gene 101 (TSG101) family protein similar to SP|Q99816 Tumor susceptibility gene 101 protein {Homo sapiens}; contains Pfam profile PF05743: Tumour susceptibility gene 101 protein (TSG101) Length = 368 Score = 28.7 bits (61), Expect = 5.5 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -2 Query: 441 PPLTTQRRPAPQDIPAHDSAQALHGTPPERT 349 PPL +QRRP PQ P+ S + PP +T Sbjct: 156 PPLYSQRRPPPQPSPSIGSGYS-RPLPPRQT 185 >At1g75050.1 68414.m08717 thaumatin-like protein, putative / pathogenesis-related protein, putative similar to thaumatin-like protein [Arabidopsis thaliana] GI:2435406, SP|P28493 Pathogenesis-related protein 5 precursor (PR-5) {Arabidopsis thaliana}; contains Pfam profile: PF00314 Thaumatin family Length = 257 Score = 28.7 bits (61), Expect = 5.5 Identities = 12/32 (37%), Positives = 15/32 (46%) Frame = +2 Query: 233 CSSVSALRMTRAECCTGASRSPAAXSPKDYDS 328 C S A + CCTGA +P SP Y + Sbjct: 189 CKSACAAFNSEEFCCTGAHATPQTCSPTHYSA 220 >At1g75030.1 68414.m08715 pathogenesis-related thaumatin family protein identical to thaumatin-like protein [Arabidopsis thaliana] GI:2435406; contains Pfam profile: PF00314 Thaumatin family Length = 246 Score = 28.7 bits (61), Expect = 5.5 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = +2 Query: 233 CSSVSALRMTRAECCTGASRSPAAXSPKDYDS 328 C S A + CCTGA +P SP Y S Sbjct: 178 CKSACAAFSSPEFCCTGAHATPQTCSPTYYSS 209 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,735,986 Number of Sequences: 28952 Number of extensions: 244353 Number of successful extensions: 593 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 503 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 590 length of database: 12,070,560 effective HSP length: 81 effective length of database: 9,725,448 effective search space used: 2090971320 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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