Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O22
         (892 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13300.2 68416.m01675 transducin family protein / WD-40 repea...    30   1.8  
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea...    30   1.8  
At5g13860.1 68418.m01620 tumour susceptibility gene 101 (TSG101)...    29   5.5  
At1g75050.1 68414.m08717 thaumatin-like protein, putative / path...    29   5.5  
At1g75030.1 68414.m08715 pathogenesis-related thaumatin family p...    29   5.5  

>At3g13300.2 68416.m01675 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400);
           autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
           and autoantigen locus HSU17474 (GI:596134) [Homo
           sapiens]
          Length = 1309

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 28/102 (27%), Positives = 41/102 (40%)
 Frame = -2

Query: 501 SLPHTALTXRHDAAQTHLARPPLTTQRRPAPQDIPAHDSAQALHGTPPERTL*KNISPLS 322
           S P   L  ++D  Q H A P ++ Q  P  Q      S+ A     P+RTL     PL+
Sbjct: 3   SSPGPFLHNQYD--QQHYAPPGISAQPSPVTQQQQDVSSSSAATNLHPQRTLSYPTPPLN 60

Query: 321 *SLGLQAAGDREAPVQHSARVMRNADTELQRPARSIPTQQIP 196
               LQ+      P  H   ++ N +      A   P+ Q+P
Sbjct: 61  ----LQSPRSNHNPGTHILALLNNTNNGAP-VANQEPSHQLP 97


>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400);
           autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
           and autoantigen locus HSU17474 (GI:596134) [Homo
           sapiens]
          Length = 1344

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 26/100 (26%), Positives = 38/100 (38%)
 Frame = -2

Query: 495 PHTALTXRHDAAQTHLARPPLTTQRRPAPQDIPAHDSAQALHGTPPERTL*KNISPLS*S 316
           P T     +   Q H A P ++ Q  P  Q      S+ A     P+RTL     PL+  
Sbjct: 38  PPTGPFLHNQYDQQHYAPPGISAQPSPVTQQQQDVSSSSAATNLHPQRTLSYPTPPLN-- 95

Query: 315 LGLQAAGDREAPVQHSARVMRNADTELQRPARSIPTQQIP 196
             LQ+      P  H   ++ N +      A   P+ Q+P
Sbjct: 96  --LQSPRSNHNPGTHILALLNNTNNGAP-VANQEPSHQLP 132


>At5g13860.1 68418.m01620 tumour susceptibility gene 101 (TSG101)
           family protein similar to SP|Q99816 Tumor susceptibility
           gene 101 protein {Homo sapiens}; contains Pfam profile
           PF05743: Tumour susceptibility gene 101 protein (TSG101)
          Length = 368

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 441 PPLTTQRRPAPQDIPAHDSAQALHGTPPERT 349
           PPL +QRRP PQ  P+  S  +    PP +T
Sbjct: 156 PPLYSQRRPPPQPSPSIGSGYS-RPLPPRQT 185


>At1g75050.1 68414.m08717 thaumatin-like protein, putative /
           pathogenesis-related protein, putative similar to
           thaumatin-like protein [Arabidopsis thaliana]
           GI:2435406, SP|P28493 Pathogenesis-related protein 5
           precursor (PR-5) {Arabidopsis thaliana}; contains Pfam
           profile: PF00314 Thaumatin family
          Length = 257

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 233 CSSVSALRMTRAECCTGASRSPAAXSPKDYDS 328
           C S  A   +   CCTGA  +P   SP  Y +
Sbjct: 189 CKSACAAFNSEEFCCTGAHATPQTCSPTHYSA 220


>At1g75030.1 68414.m08715 pathogenesis-related thaumatin family
           protein identical to thaumatin-like protein [Arabidopsis
           thaliana] GI:2435406; contains Pfam profile: PF00314
           Thaumatin family
          Length = 246

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 233 CSSVSALRMTRAECCTGASRSPAAXSPKDYDS 328
           C S  A   +   CCTGA  +P   SP  Y S
Sbjct: 178 CKSACAAFSSPEFCCTGAHATPQTCSPTYYSS 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,735,986
Number of Sequences: 28952
Number of extensions: 244353
Number of successful extensions: 593
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)