Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O21
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1319 + 26117353-26117784                                         29   4.7  
07_03_0579 + 19649978-19650442                                         28   8.2  
07_03_0568 - 19593265-19593729                                         28   8.2  
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588...    28   8.2  
03_01_0399 + 3097878-3098141,3098254-3098547,3098659-3098886,309...    28   8.2  

>08_02_1319 + 26117353-26117784
          Length = 143

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 459 KGTSSRTATLPSRKEGALPSTCPSRQTRPRQGICARTL 572
           +GTS     L ++ +   P TCP++  RP     +RT+
Sbjct: 87  RGTSKPDKYLKAKSDSVRPRTCPAKSGRPPGASSSRTV 124


>07_03_0579 + 19649978-19650442
          Length = 154

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 474 RTATLPSRKEGALPSTCPSRQTRPRQGICARTLPRLKRKFM 596
           R A    + +G  P+  P+    PR     ++LPRLK + +
Sbjct: 99  RVAVKDVKLQGPRPAPTPANMAAPRPTTAGKSLPRLKMQML 139


>07_03_0568 - 19593265-19593729
          Length = 154

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 474 RTATLPSRKEGALPSTCPSRQTRPRQGICARTLPRLKRKFM 596
           R A    + +G  P+  P+    PR     ++LPRLK + +
Sbjct: 99  RVAVKDVKLQGPRPAPTPANMAAPRPTTAGKSLPRLKMQML 139


>07_01_0766 -
           5885207-5885791,5885874-5886224,5886252-5886269,
           5886339-5886541,5886632-5886890,5887052-5887264,
           5887357-5887482,5887590-5887727,5887817-5888162,
           5888254-5888520,5888983-5889172,5889264-5889363,
           5889444-5889694,5889990-5890182,5890313-5890336
          Length = 1087

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +2

Query: 395 SARSPTLPRCQTCPLPS*RDCQGYQFTYRNPTQSKRRCLTQYMSQSTDPS 544
           +A       C  C  P  R C  Y++  ++ TQ+  +C T+Y      P+
Sbjct: 29  TAEGDVFAACDVCGFPVCRPC--YEYERKDGTQACPQCKTKYKRHKGSPA 76


>03_01_0399 +
           3097878-3098141,3098254-3098547,3098659-3098886,
           3099148-3099224,3099501-3099540,3099737-3099802,
           3100305-3100706,3100777-3100888,3101445-3101530,
           3101607-3101672
          Length = 544

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +3

Query: 552 GICARTLPRLKRKFMFQSKCTCPL--LTQXRKSTLPRX---RSRTCACSLPRIQR 701
           G+ +R  P  K   + Q+ C CP   L Q  KS L R       TCAC++P  Q+
Sbjct: 160 GMLSRVDPNRK---VTQAICICPTRELAQQNKSVLMRMGKFTGITCACAIPPAQK 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,279,717
Number of Sequences: 37544
Number of extensions: 322624
Number of successful extensions: 864
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)