Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O21
         (848 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30)             29   4.8  
SB_38001| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027)                    29   6.3  
SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.3  
SB_57323| Best HMM Match : ShTK (HMM E-Value=0)                        28   8.3  

>SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30)
          Length = 289

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 368 RKENPLPRESARSPTLPRCQTC-PLPS*RDCQGYQ 469
           RK  PL    A  P+LP C TC   P+     GYQ
Sbjct: 118 RKSTPLATAPAPIPSLPTCPTCVNTPTSTGLSGYQ 152


>SB_38001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
 Frame = +2

Query: 359 YPVRKENPLPRES------ARSPTLPRCQTCPLPS*RDCQGYQFTYRNPTQSKRRCLTQY 520
           YPVR+    P++S      + SP+L      P P+ R            T+ +RR L Q 
Sbjct: 31  YPVRRRQGSPQDSQIRPRGSGSPSLQYGGGLPSPARRGTPSK--LRAEETEIRRRSLPQV 88

Query: 521 MSQSTDPSPSRYMCQNLTP 577
            S     SPS Y    +TP
Sbjct: 89  PSSRNSLSPSSYSDHQITP 107


>SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027)
          Length = 406

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
 Frame = +1

Query: 628 PSXEKVXYPVKGPVHVPAPYPVYKEVXXTXKVHVDRPYPVHFPT--XAXPVXNPS 786
           PS     YP   P   PA YP               PYP  +P    A P   P+
Sbjct: 68  PSSYPASYPASYPASYPASYPASYPASYPTSYPYPSPYPAPYPATYSAAPAAYPA 122


>SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1371

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 29/85 (34%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
 Frame = +2

Query: 359 YPVRKENPLPRESARSPTLPRCQTCPLPS*RDCQGYQFTYRN---PTQS-KRRCLTQYMS 526
           YP     PLP  S R+ T   C   P+PS        F  R    P  S   R LT Y  
Sbjct: 323 YPCPHLLPLPSPSTRALTFYPCPHLPVPS-PSTHALTFYPRPQFLPMPSPSTRALTFYPC 381

Query: 527 QSTDPSPSR-------YMCQNLTPF 580
               P PS        Y+CQ+L PF
Sbjct: 382 PHLLPVPSTSTRALNFYLCQHLLPF 406


>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
          Length = 911

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 665 PYMCLLLTPYTKRYXXPXRSMWTDPTPCI 751
           PY CL  +P+   Y  P   ++T P  C+
Sbjct: 546 PYTCLYTSPHAWLYTRPHACLYTRPHACL 574


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,156,562
Number of Sequences: 59808
Number of extensions: 346743
Number of successful extensions: 1013
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)