Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O21
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    35   0.079
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex...    31   1.3  
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si...    31   1.3  
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    28   6.8  
At2g38160.1 68415.m04684 expressed protein                             28   9.0  

>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 34.7 bits (76), Expect = 0.079
 Identities = 18/55 (32%), Positives = 21/55 (38%)
 Frame = +1

Query: 652 PVKGPVHVPAPYPVYKEVXXTXKVHVDRPYPVHFPTXAXPVXNPSXPXXXXXLPV 816
           P   P+H P P PVY             P PV+ P    PV +P  P      PV
Sbjct: 502 PPPSPIHSPPPPPVYSPPPPPPVYSPPPPPPVYSPPPPPPVHSPPPPVHSPPPPV 556


>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 699

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/51 (39%), Positives = 21/51 (41%)
 Frame = +1

Query: 664 PVHVPAPYPVYKEVXXTXKVHVDRPYPVHFPTXAXPVXNPSXPXXXXXLPV 816
           PVH P P PVY        VH   P PV  P    PV +P  P      PV
Sbjct: 546 PVHSPPPPPVYSPPPPPPPVH-SPPPPVFSP--PPPVYSPPPPVHSPPPPV 593


>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
           similar to SP|O94761 ATP-dependent DNA helicase Q4
           (RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 911

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 295 PQNRNCR*ESSRSLPRRKAHPLPG*KRKSPTP*KCTFPNPTPLS 426
           P +R     SSRS P+   HP P   +++P P    +P P P S
Sbjct: 37  PVSRKMTSSSSRSKPKAPTHPPPNPSQEAPVP--SPYPPPPPPS 78


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 21/56 (37%), Positives = 23/56 (41%)
 Frame = +1

Query: 649 YPVKGPVHVPAPYPVYKEVXXTXKVHVDRPYPVHFPTXAXPVXNPSXPXXXXXLPV 816
           Y    PVH P P PV+        VH   P PVH P    PV +P  P      PV
Sbjct: 675 YSPPPPVHSPPPPPVHS---PPPPVH-SPPPPVHSP--PPPVHSPPPPVHSPPPPV 724


>At2g38160.1 68415.m04684 expressed protein
          Length = 299

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = +3

Query: 459 KGTSSRTATLPSRK--EGALPSTCPSRQTRPRQGICARTLPRLKR--KFMFQSKCTCPLL 626
           + T +  ATLPS +    A  S   S  T  +    A   PR     K +  +KCT P +
Sbjct: 148 QATPTSRATLPSTRLTNSAQKSNSESITTSIKSNTRASAFPRSSSVGKSVSSAKCTTPKI 207

Query: 627 TQXRKSTLPRXRSR 668
            + R   +   RSR
Sbjct: 208 PETRARPVSTSRSR 221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,257,162
Number of Sequences: 28952
Number of extensions: 239508
Number of successful extensions: 603
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)