Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_O20
(833 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28) 395 e-110
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9) 36 0.054
SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7) 30 2.0
SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012) 30 2.7
SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7) 29 4.6
SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52) 29 4.6
SB_39212| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68) 29 4.6
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31) 29 4.6
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 29 6.1
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 29 6.1
SB_35740| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014) 28 8.1
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
Length = 240
Score = 395 bits (972), Expect = e-110
Identities = 192/234 (82%), Positives = 205/234 (87%), Gaps = 1/234 (0%)
Frame = +3
Query: 42 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 221
ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGR 64
Query: 222 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 401
RIRELTSVVQKRF PE SVELYAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVLR
Sbjct: 65 RIRELTSVVQKRFGFPEGSVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVLR 124
Query: 402 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 581
FIMESGA+GCEVVVSGKLRGQRAKSMKFVDGLM+H+G+P YV+TA RHV LRQGVLGI
Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMVHAGEPTTHYVDTAVRHVYLRQGVLGI 184
Query: 582 KVKIMLPWDQQGXNGPKKPQPDHILVTEPKDEPVPLEPTSEVRSXAPGP-XPXP 740
KVKIMLPWD G GPKKP PD + + EPKDE VP +PTSE + P P P
Sbjct: 185 KVKIMLPWDPTGKTGPKKPLPDQVSIVEPKDEVVPAQPTSEHKGGKQEPSQPVP 238
>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
Length = 482
Score = 35.5 bits (78), Expect = 0.054
Identities = 17/30 (56%), Positives = 17/30 (56%)
Frame = +2
Query: 596 VAVGPARQXRPEEATTRPHPGDRAQGRARA 685
VA GPAR PE TRPHPG GR A
Sbjct: 107 VAAGPARITSPEPPATRPHPGRVEAGRRLA 136
>SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7)
Length = 301
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +2
Query: 608 PARQXRPEEATTRPHPGDRAQGRARA 685
PAR PE TRPHPG GR A
Sbjct: 42 PARVTSPEPPATRPHPGRVEAGRRLA 67
>SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012)
Length = 1115
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +2
Query: 608 PARQXRPEEATTRPHPGDRAQGRARA 685
PAR PE TRPHPG GR A
Sbjct: 537 PARITSPEPPATRPHPGRVEAGRRLA 562
>SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)
Length = 383
Score = 29.1 bits (62), Expect = 4.6
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Frame = +3
Query: 96 EFLTRELAEDGYSGVEVR--VTPIR----SEIIIMATRTQSVLGEKGRRIRELTSVVQKR 257
E+L R++ D YS E +TP +IMA R QSVL ++GR +LT Q+R
Sbjct: 175 EYLQRKI-NDAYSPEEAEKNITPYSLCSYENPMIMAFRLQSVLRKRGR--DDLT-WAQQR 230
Query: 258 FNIPEQSVELYA 293
F+ SVE +A
Sbjct: 231 FDDLADSVEQFA 242
>SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)
Length = 516
Score = 29.1 bits (62), Expect = 4.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 660 TEPKDEPVPLEPTSEVRSXAPGPXP 734
+EP D P P+ P E+ + P P P
Sbjct: 55 SEPSDSPGPMSPEPEIMTPTPEPSP 79
>SB_39212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 644 RPHPGDRAQGRARAPRADQRSALXR 718
RP G R QGR + PR+ RSAL R
Sbjct: 1 RPTAGLRPQGRTQRPRSRPRSALRR 25
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = +3
Query: 126 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 305
GY+ + + S +++ A +++ ++ + +RE +QKRF E+ +Y
Sbjct: 1941 GYTARKEYSRCVTSIVLMQALVRRNLAVKRYQALREAAIGIQKRFRAKEEGKLVYLMFHI 2000
Query: 306 TRGLCAIAQA 335
RG C + Q+
Sbjct: 2001 QRGACIVIQS 2010
>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
Length = 401
Score = 29.1 bits (62), Expect = 4.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 446 WQAAWSTCQINEVCRWTHDPLW 511
W+ AW+ C + E +T++P W
Sbjct: 76 WKQAWTPCSLQETTIYTNNPPW 97
>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
Length = 976
Score = 29.1 bits (62), Expect = 4.6
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +2
Query: 440 CIWQAAWSTCQINEVCRWTHDPLWRP 517
C W + W + E WTH P RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210
>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +2
Query: 305 YSWSLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWRPW 427
Y+W L + P + ++ Y R + L C+P + W W
Sbjct: 4 YNWWLAWNPALLCLMRQYNRWLAWNPALLCNPRQYNRWLAW 44
>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 519
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 706 TSLVGSRGTGSSLGSVTRMWSGCGFFGPXLPCW 608
+S+ S G GSSLGS+ R W P W
Sbjct: 214 SSIASSLGLGSSLGSMGRDWGRMSTNSPSFQSW 246
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +2
Query: 599 AVGPARQXRPEEATTRPHPGDRAQGRA 679
A AR PE TRPHPG GRA
Sbjct: 1497 AARDARITSPEPPATRPHPGRVEAGRA 1523
>SB_35740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -3
Query: 744 RPXXAXAPARXSALRWSARGARARPWALSPGCGLVVASSGRXCLAG 607
RP A P R L W A + P C LV A+S R LAG
Sbjct: 630 RPEAAWVPKRSGCLAWEPSTAPSLP------CDLVAATSARIYLAG 669
>SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014)
Length = 988
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +2
Query: 566 RSTRNQGQNHVAVGPA--RQXRPEEATTRPHPGDRAQGRARA 685
+ R + VA PA R PE TRPHPG GR A
Sbjct: 801 KQRREPARTPVAALPAAARVTSPEPPATRPHPGRVEAGRRLA 842
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 576 GIKVKIMLPWDQQGXNGPKKPQ-PDHILVTEPKDEPVPLEPTSEVRS 713
G+K+K+ML D+ G + P P+ P P + P E S +S
Sbjct: 1628 GLKIKLMLKKDRSGGSSPVSPRSPSPCEPRLPLESRSPFESNSSFQS 1674
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,247,503
Number of Sequences: 59808
Number of extensions: 551063
Number of successful extensions: 1929
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1908
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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