Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_O20
(833 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 354 4e-98
AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical... 33 0.33
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr... 30 2.3
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 30 2.3
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 30 2.3
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 30 2.3
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 29 3.1
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 29 4.1
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 29 5.4
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 29 5.4
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 28 7.2
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 28 7.2
Z99279-6|CAB16498.1| 640|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z82284-8|CAB05294.1| 640|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 28 9.5
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 28 9.5
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 28 9.5
AF000261-3|AAB52924.1| 464|Caenorhabditis elegans Hypothetical ... 28 9.5
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 354 bits (871), Expect = 4e-98
Identities = 173/244 (70%), Positives = 200/244 (81%), Gaps = 4/244 (1%)
Frame = +3
Query: 27 MAVN-NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 203
MA N N++KK+K V G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+V
Sbjct: 1 MAANQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNV 60
Query: 204 LGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 383
LGE+GRRI+ELTSVVQKRF E SVELYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRA
Sbjct: 61 LGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRA 120
Query: 384 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 563
CYGVLRFIMESGA+G EV+VSGKLRGQRAK+MKFVDGLMIHSG P NDY+ A RHV LR
Sbjct: 121 CYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLR 180
Query: 564 QGVLGIKVKIMLPWDQQGXNGPKKPQPDHILVTEPKDEPVPLEPTS---EVRSXAPGPXP 734
QGV+GIKVKIMLP+D +G NGP+ PDH+ + EP++E +P EP S E + P
Sbjct: 181 QGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQHKEEKKDVQVPAA 240
Query: 735 XPVA 746
PVA
Sbjct: 241 QPVA 244
>AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical
protein F25E5.1 protein.
Length = 1062
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 621 NGPKKPQPDHILVTEPKDEPVPLEPTSEVRSXAPGPXPXPVAAXR 755
NGPKK + +L+T P E V E + +P P P +A R
Sbjct: 998 NGPKKSKNQMMLITFPSREIVEEEEPPQEAEQSPSPDPEKIAKRR 1042
>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
protein C05C10.2b protein.
Length = 1553
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 18 VAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 131
+A +I KK F GDG F E E+ +DGY
Sbjct: 885 IAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922
>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
protein C05C10.2a protein.
Length = 1551
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 18 VAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 131
+A +I KK F GDG F E E+ +DGY
Sbjct: 885 IAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = -2
Query: 745 ATGXGXGPGAXERTSLVGSRGTGSSLGSVTRMWSGCGFFGP 623
A G G GA R G G SSL S + G GF GP
Sbjct: 584 AYGGSFGGGAPRRPFTNGGFGAHSSLSSTSNSGGGGGFSGP 624
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = -2
Query: 745 ATGXGXGPGAXERTSLVGSRGTGSSLGSVTRMWSGCGFFGP 623
A G G GA R G G SSL S + G GF GP
Sbjct: 568 AYGGSFGGGAPRRPFTNGGFGAHSSLSSTSNSGGGGGFSGP 608
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = -2
Query: 745 ATGXGXGPGAXERTSLVGSRGTGSSLGSVTRMWSGCGFFGP 623
A G G GA R G G SSL S + G GF GP
Sbjct: 565 AYGGSFGGGAPRRPFTNGGFGAHSSLSSTSNSGGGGGFSGP 605
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 192 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 311
+ S+ G+KG+ +REL + + K ++ E++ + AE A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +3
Query: 114 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 275
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +3
Query: 114 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 275
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
protein B0496.3a protein.
Length = 1551
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 679 GSSLGSVTRMWSGCGFFGPXLPCWSHGNMILTLI 578
GS L + + +G + GP + CWS G ++ TL+
Sbjct: 234 GSPLYASPEIINGTPYKGPEVDCWSLGILLYTLV 267
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
protein B0496.3b protein.
Length = 1592
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 679 GSSLGSVTRMWSGCGFFGPXLPCWSHGNMILTLI 578
GS L + + +G + GP + CWS G ++ TL+
Sbjct: 234 GSPLYASPEIINGTPYKGPEVDCWSLGILLYTLV 267
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +2
Query: 533 QHCYQTCASQARSTRNQGQNHVA 601
Q CY CAS ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +2
Query: 533 QHCYQTCASQARSTRNQGQNHVA 601
Q CY CAS ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>Z99279-6|CAB16498.1| 640|Caenorhabditis elegans Hypothetical
protein Y57G11A.2 protein.
Length = 640
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 657 VTEPKDEPVPLEPTSEVRSXAPGPXPXP 740
V EP +EP P SE+ S P P P P
Sbjct: 547 VPEPTEEP-PTPTDSEIDSPTPAPAPGP 573
>Z82284-8|CAB05294.1| 640|Caenorhabditis elegans Hypothetical
protein Y57G11A.2 protein.
Length = 640
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 657 VTEPKDEPVPLEPTSEVRSXAPGPXPXP 740
V EP +EP P SE+ S P P P P
Sbjct: 547 VPEPTEEP-PTPTDSEIDSPTPAPAPGP 573
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +3
Query: 636 PQPDHILVTEPKDEPVPL---EPTSE 704
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +3
Query: 636 PQPDHILVTEPKDEPVPL---EPTSE 704
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
protein R11A8.7d protein.
Length = 1427
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +3
Query: 636 PQPDHILVTEPKDEPVPL---EPTSE 704
P+P+ ++++EP EPVP+ EP E
Sbjct: 468 PEPEPVVISEPVPEPVPIVVEEPPKE 493
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
protein R11A8.7c protein.
Length = 1405
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +3
Query: 636 PQPDHILVTEPKDEPVPL---EPTSE 704
P+P+ ++++EP EPVP+ EP E
Sbjct: 468 PEPEPVVISEPVPEPVPIVVEEPPKE 493
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +3
Query: 636 PQPDHILVTEPKDEPVPL---EPTSE 704
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +3
Query: 636 PQPDHILVTEPKDEPVPL---EPTSE 704
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>AF000261-3|AAB52924.1| 464|Caenorhabditis elegans Hypothetical
protein F19B10.4 protein.
Length = 464
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +2
Query: 533 QHCYQTCASQARSTRNQGQNHVAVGPARQXRPEEATTRPHPGDRAQGRARAPRAD 697
Q C Q S +S N + GPA++ RPE P DR + + R D
Sbjct: 113 QSCLQNELSALKSANNAMKTSKN-GPAKEHRPENGKLSPETLDRGKEENQEGRQD 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,068,762
Number of Sequences: 27780
Number of extensions: 394736
Number of successful extensions: 1629
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1562
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -