Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O20
         (833 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   1.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   1.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -1

Query: 506  VDHESIYKLH*FGTLTTQLARYNNFTTTGARFHDETENTIASTTYSETSD 357
            VD   + K     T+ T L +Y N+T     F    +    + TY +T +
Sbjct: 1162 VDEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTEE 1211


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -1

Query: 506  VDHESIYKLH*FGTLTTQLARYNNFTTTGARFHDETENTIASTTYSETSD 357
            VD   + K     T+ T L +Y N+T     F    +    + TY +T +
Sbjct: 1158 VDEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTEE 1207


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = +3

Query: 621 NGPKKPQPDHILVTEPKDEPVPLEPTSEVRSXAPGPXPXPVAAXRL 758
           +GP   + D I     K+  + L   S+  +  P P P P    R+
Sbjct: 351 SGPDSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPGPTPAQKARM 396


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 143  SPGHSHPLGDHYYGHQDTKCARRERT 220
            S  H  PL +H Y   D+  +  ERT
Sbjct: 1323 SEDHRRPLSEHIYSSIDSDYSTLERT 1348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 657 VTEPKDEPVPLEPTSEVRSXAPGPXPXP 740
           +T+ K +P+  + + +  S APGP P P
Sbjct: 1   MTQQK-QPIITQQSQQPSSGAPGPQPSP 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,876
Number of Sequences: 438
Number of extensions: 4788
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)