Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O15
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    28   1.5  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    28   1.9  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   4.4  

>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 589 TGTYNDGLARGFPQQATSCGSAGQVRVDRGLRQ 687
           TG YNDG+  G     T    AGQ++   G  Q
Sbjct: 231 TGKYNDGIPEGSRLSTTFTSLAGQLQTPEGKTQ 263


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = +2

Query: 305 SDKGHKIPNRIPMRDENDCDTRAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERVGMV 481
           S   + +P  IP+  E+  DT+A +K  S + +T +   +I N+  DI R + E +  +
Sbjct: 167 SQLSYSLPQIIPVVSESMWDTKAEVKKQSKETMTKV-CTLIANA--DIDRFIPELINCI 222


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 287 QVVSNGSDKGHKIPNRIPMRDENDCDTRAYIKDDSVKIVTLMSAPI-IPNSA 439
           Q  S     G ++PN      +N+ + +  +K+DS K     SAPI +P S+
Sbjct: 28  QKKSISPSSGSELPNFKTTISQNNEEVKTSLKEDSSKFHPSASAPIFVPTSS 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,825
Number of Sequences: 5004
Number of extensions: 56904
Number of successful extensions: 175
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)