BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_O15 (848 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom... 28 1.5 SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 28 1.9 SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 4.4 >SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pombe|chr 3|||Manual Length = 344 Score = 28.3 bits (60), Expect = 1.5 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = +1 Query: 589 TGTYNDGLARGFPQQATSCGSAGQVRVDRGLRQ 687 TG YNDG+ G T AGQ++ G Q Sbjct: 231 TGKYNDGIPEGSRLSTTFTSLAGQLQTPEGKTQ 263 >SPCC417.08 |tef3||translation elongation factor eEF3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1047 Score = 27.9 bits (59), Expect = 1.9 Identities = 17/59 (28%), Positives = 31/59 (52%) Frame = +2 Query: 305 SDKGHKIPNRIPMRDENDCDTRAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERVGMV 481 S + +P IP+ E+ DT+A +K S + +T + +I N+ DI R + E + + Sbjct: 167 SQLSYSLPQIIPVVSESMWDTKAEVKKQSKETMTKV-CTLIANA--DIDRFIPELINCI 222 >SPCC18.03 |||shuttle craft like transcriptional regulator|Schizosaccharomyces pombe|chr 3|||Manual Length = 1077 Score = 26.6 bits (56), Expect = 4.4 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = +2 Query: 287 QVVSNGSDKGHKIPNRIPMRDENDCDTRAYIKDDSVKIVTLMSAPI-IPNSA 439 Q S G ++PN +N+ + + +K+DS K SAPI +P S+ Sbjct: 28 QKKSISPSSGSELPNFKTTISQNNEEVKTSLKEDSSKFHPSASAPIFVPTSS 79 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,029,825 Number of Sequences: 5004 Number of extensions: 56904 Number of successful extensions: 175 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 170 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 175 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 420459900 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -