BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_O15 (848 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_3031| Best HMM Match : NblA (HMM E-Value=8.4) 29 3.6 SB_29611| Best HMM Match : DED (HMM E-Value=6.5) 29 3.6 SB_4933| Best HMM Match : DUF360 (HMM E-Value=0.79) 29 3.6 SB_14231| Best HMM Match : RVT_1 (HMM E-Value=0.00045) 29 4.8 SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8 >SB_3031| Best HMM Match : NblA (HMM E-Value=8.4) Length = 256 Score = 29.5 bits (63), Expect = 3.6 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = -3 Query: 252 PEYNPPLTILPSPQ*STCSISSPVMGSLSSL 160 P PLT+LP+P ++C + P M SLS L Sbjct: 168 PSMGGPLTLLPTPDTNSC--TKPAMSSLSPL 196 >SB_29611| Best HMM Match : DED (HMM E-Value=6.5) Length = 486 Score = 29.5 bits (63), Expect = 3.6 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = -3 Query: 252 PEYNPPLTILPSPQ*STCSISSPVMGSLSSL 160 P PLT+LP+P ++C + P M SLS L Sbjct: 156 PSMGGPLTLLPTPDTNSC--TKPAMSSLSPL 184 >SB_4933| Best HMM Match : DUF360 (HMM E-Value=0.79) Length = 443 Score = 29.5 bits (63), Expect = 3.6 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 3/77 (3%) Frame = -2 Query: 388 VILDVSPGVAVVLVAHR-DPV--GDLVTLVGPVADHLVLSVHIVAVAEARIQSPVDDTPL 218 ++LDV V VVL+ D V G ++ +V V + LVL V + V E + VDD L Sbjct: 338 LVLDVVDDVIVVLMFDIVDDVFEGLMLDVVDDVIEGLVLDV-VDDVIEGLMLDVVDDVIL 396 Query: 217 APVVDMFDQLSSDGELE 167 ++D+FD ++ L+ Sbjct: 397 VLMLDVFDDVNEGLRLD 413 >SB_14231| Best HMM Match : RVT_1 (HMM E-Value=0.00045) Length = 519 Score = 29.1 bits (62), Expect = 4.8 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +2 Query: 101 YVTNVDLKYPYSELPYTAQY-KLLKLPITGELIEH 202 Y+ +VDLKY Y +P ++ K+LK G+L ++ Sbjct: 298 YMCSVDLKYAYYSVPIAPEHKKILKFSWRGKLYQY 332 >SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2851 Score = 29.1 bits (62), Expect = 4.8 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = +1 Query: 295 QQRVRQGSQDPQQDPDARRERLRHPGLHQG*LGQNSDAHECAHHSEQRQR 444 Q R R G +D +QD + + E LR P G + + D A +R R Sbjct: 1133 QGRDRDGERDQEQDRETQEESLREPEQEVGNI-KGKDQDTVAERDRERNR 1181 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 24,276,802 Number of Sequences: 59808 Number of extensions: 476513 Number of successful extensions: 1267 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1184 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1264 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2407378809 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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