Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O15
         (848 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3031| Best HMM Match : NblA (HMM E-Value=8.4)                       29   3.6  
SB_29611| Best HMM Match : DED (HMM E-Value=6.5)                       29   3.6  
SB_4933| Best HMM Match : DUF360 (HMM E-Value=0.79)                    29   3.6  
SB_14231| Best HMM Match : RVT_1 (HMM E-Value=0.00045)                 29   4.8  
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  

>SB_3031| Best HMM Match : NblA (HMM E-Value=8.4)
          Length = 256

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 252 PEYNPPLTILPSPQ*STCSISSPVMGSLSSL 160
           P    PLT+LP+P  ++C  + P M SLS L
Sbjct: 168 PSMGGPLTLLPTPDTNSC--TKPAMSSLSPL 196


>SB_29611| Best HMM Match : DED (HMM E-Value=6.5)
          Length = 486

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 252 PEYNPPLTILPSPQ*STCSISSPVMGSLSSL 160
           P    PLT+LP+P  ++C  + P M SLS L
Sbjct: 156 PSMGGPLTLLPTPDTNSC--TKPAMSSLSPL 184


>SB_4933| Best HMM Match : DUF360 (HMM E-Value=0.79)
          Length = 443

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
 Frame = -2

Query: 388 VILDVSPGVAVVLVAHR-DPV--GDLVTLVGPVADHLVLSVHIVAVAEARIQSPVDDTPL 218
           ++LDV   V VVL+    D V  G ++ +V  V + LVL V +  V E  +   VDD  L
Sbjct: 338 LVLDVVDDVIVVLMFDIVDDVFEGLMLDVVDDVIEGLVLDV-VDDVIEGLMLDVVDDVIL 396

Query: 217 APVVDMFDQLSSDGELE 167
             ++D+FD ++    L+
Sbjct: 397 VLMLDVFDDVNEGLRLD 413


>SB_14231| Best HMM Match : RVT_1 (HMM E-Value=0.00045)
          Length = 519

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 101 YVTNVDLKYPYSELPYTAQY-KLLKLPITGELIEH 202
           Y+ +VDLKY Y  +P   ++ K+LK    G+L ++
Sbjct: 298 YMCSVDLKYAYYSVPIAPEHKKILKFSWRGKLYQY 332


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 295  QQRVRQGSQDPQQDPDARRERLRHPGLHQG*LGQNSDAHECAHHSEQRQR 444
            Q R R G +D +QD + + E LR P    G + +  D    A    +R R
Sbjct: 1133 QGRDRDGERDQEQDRETQEESLREPEQEVGNI-KGKDQDTVAERDRERNR 1181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,276,802
Number of Sequences: 59808
Number of extensions: 476513
Number of successful extensions: 1267
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)