BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_O15 (848 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U41542-4|AAK39154.1| 437|Caenorhabditis elegans Hypothetical pr... 36 0.028 U41542-3|AAK39156.1| 403|Caenorhabditis elegans Hypothetical pr... 36 0.028 AF025464-2|AAN84804.1| 496|Caenorhabditis elegans Prion-like-(q... 29 4.2 AF025464-1|AAN84805.1| 529|Caenorhabditis elegans Prion-like-(q... 29 4.2 Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical pr... 29 5.5 Z83219-6|CAB05696.5| 351|Caenorhabditis elegans Hypothetical pr... 28 7.3 Z82288-6|CAB05325.1| 1112|Caenorhabditis elegans Hypothetical pr... 28 7.3 Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 28 7.3 AB201389-1|BAE78829.1| 1113|Caenorhabditis elegans recepotor typ... 28 7.3 AF068721-1|AAC19263.1| 369|Caenorhabditis elegans Hypothetical ... 28 9.6 >U41542-4|AAK39154.1| 437|Caenorhabditis elegans Hypothetical protein C07A12.7a protein. Length = 437 Score = 36.3 bits (80), Expect = 0.028 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Frame = -2 Query: 355 VLVAHRDPVGDLVTLVGPVAD-HLVLSVHIVAVAEARIQSPVDDTPLAPVVDMFDQLSSD 179 VLV ++D V DL+ L+GP D ++ ++++ +A + D LA VV +D L S Sbjct: 116 VLVCNKDFVQDLIKLIGPKFDAPQIIQERVLSLIQAWADAFRGDPTLAGVVQSYDDLKSK 175 Query: 178 G 176 G Sbjct: 176 G 176 >U41542-3|AAK39156.1| 403|Caenorhabditis elegans Hypothetical protein C07A12.7b protein. Length = 403 Score = 36.3 bits (80), Expect = 0.028 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Frame = -2 Query: 355 VLVAHRDPVGDLVTLVGPVAD-HLVLSVHIVAVAEARIQSPVDDTPLAPVVDMFDQLSSD 179 VLV ++D V DL+ L+GP D ++ ++++ +A + D LA VV +D L S Sbjct: 116 VLVCNKDFVQDLIKLIGPKFDAPQIIQERVLSLIQAWADAFRGDPTLAGVVQSYDDLKSK 175 Query: 178 G 176 G Sbjct: 176 G 176 >AF025464-2|AAN84804.1| 496|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 42, isoform a protein. Length = 496 Score = 29.1 bits (62), Expect = 4.2 Identities = 20/76 (26%), Positives = 33/76 (43%) Frame = +1 Query: 229 RQRGIVFGLPRLLQCEPTVPSGQQRVRQGSQDPQQDPDARRERLRHPGLHQG*LGQNSDA 408 +QR +PR Q QQ Q SQ+P Q P+ ++ + + P L Q Sbjct: 186 QQRRAQTQMPRHQQQYQAPQQQQQNYHQNSQNPYQQPNYQQNQYQ-PQLQQFQQNPRQQQ 244 Query: 409 HECAHHSEQRQRYYEN 456 H ++ + Q+ Y+N Sbjct: 245 HVYSNPQQGYQQNYQN 260 >AF025464-1|AAN84805.1| 529|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 42, isoform b protein. Length = 529 Score = 29.1 bits (62), Expect = 4.2 Identities = 20/76 (26%), Positives = 33/76 (43%) Frame = +1 Query: 229 RQRGIVFGLPRLLQCEPTVPSGQQRVRQGSQDPQQDPDARRERLRHPGLHQG*LGQNSDA 408 +QR +PR Q QQ Q SQ+P Q P+ ++ + + P L Q Sbjct: 208 QQRRAQTQMPRHQQQYQAPQQQQQNYHQNSQNPYQQPNYQQNQYQ-PQLQQFQQNPRQQQ 266 Query: 409 HECAHHSEQRQRYYEN 456 H ++ + Q+ Y+N Sbjct: 267 HVYSNPQQGYQQNYQN 282 >Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical protein C03E10.5 protein. Length = 623 Score = 28.7 bits (61), Expect = 5.5 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +3 Query: 294 SATGPTRVTRSPTGSRCATRTTATP 368 S+T T VT +PT + +T TT+TP Sbjct: 173 SSTATTMVTSTPTTEKSSTTTTSTP 197 >Z83219-6|CAB05696.5| 351|Caenorhabditis elegans Hypothetical protein C31C9.4 protein. Length = 351 Score = 28.3 bits (60), Expect = 7.3 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = +2 Query: 101 YVTNVDLKYPYSELPYTAQYKLLKLPITGELIEHVDYWGEGSIVN 235 Y N+DL Y S+ P T + + L + E++EHV+ + ++ N Sbjct: 55 YNGNLDLNYDMSQEPKTPLLQDMPLEMIEEIMEHVNLFDRVALRN 99 >Z82288-6|CAB05325.1| 1112|Caenorhabditis elegans Hypothetical protein ZK896.8 protein. Length = 1112 Score = 28.3 bits (60), Expect = 7.3 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +2 Query: 239 GLYSGFRDCYNVNRQYQVVSNGSDKGHKIPNRIPMRDE 352 GLY+GF +C N+ Y+V + G + + + IP +E Sbjct: 944 GLYTGFDECITRNKSYKVETIGD--AYMVVSGIPEENE 979 >Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical protein F58G11.2 protein. Length = 960 Score = 28.3 bits (60), Expect = 7.3 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Frame = +1 Query: 301 RVRQGSQDPQQDP--DARRERLRHPGLHQG*LGQNSDAHECAHHSEQRQRY 447 R QG QD P D +R H G H GQNS + + E R Y Sbjct: 210 RSHQGGQDRYSAPKEDNQRRYDNHQGGHDSYRGQNSGGYSGNNSGEYRNDY 260 >AB201389-1|BAE78829.1| 1113|Caenorhabditis elegans recepotor type guanyly cyclase protein. Length = 1113 Score = 28.3 bits (60), Expect = 7.3 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +2 Query: 239 GLYSGFRDCYNVNRQYQVVSNGSDKGHKIPNRIPMRDE 352 GLY+GF +C N+ Y+V + G + + + IP +E Sbjct: 945 GLYTGFDECITRNKSYKVETIGD--AYMVVSGIPEENE 980 >AF068721-1|AAC19263.1| 369|Caenorhabditis elegans Hypothetical protein ZK1055.5 protein. Length = 369 Score = 27.9 bits (59), Expect = 9.6 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +2 Query: 368 RAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERVGMVVIYGM 496 RAYI D + + I+ ARD+ R+V++ G+ + Y M Sbjct: 134 RAYIPDGEQRDYLMNKYNIVTWHARDVLRLVDDMSGISMHYAM 176 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,345,404 Number of Sequences: 27780 Number of extensions: 341517 Number of successful extensions: 957 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 895 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 957 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2108493618 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -