Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O15
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41542-4|AAK39154.1|  437|Caenorhabditis elegans Hypothetical pr...    36   0.028
U41542-3|AAK39156.1|  403|Caenorhabditis elegans Hypothetical pr...    36   0.028
AF025464-2|AAN84804.1|  496|Caenorhabditis elegans Prion-like-(q...    29   4.2  
AF025464-1|AAN84805.1|  529|Caenorhabditis elegans Prion-like-(q...    29   4.2  
Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z83219-6|CAB05696.5|  351|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z82288-6|CAB05325.1| 1112|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AB201389-1|BAE78829.1| 1113|Caenorhabditis elegans recepotor typ...    28   7.3  
AF068721-1|AAC19263.1|  369|Caenorhabditis elegans Hypothetical ...    28   9.6  

>U41542-4|AAK39154.1|  437|Caenorhabditis elegans Hypothetical
           protein C07A12.7a protein.
          Length = 437

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -2

Query: 355 VLVAHRDPVGDLVTLVGPVAD-HLVLSVHIVAVAEARIQSPVDDTPLAPVVDMFDQLSSD 179
           VLV ++D V DL+ L+GP  D   ++   ++++ +A   +   D  LA VV  +D L S 
Sbjct: 116 VLVCNKDFVQDLIKLIGPKFDAPQIIQERVLSLIQAWADAFRGDPTLAGVVQSYDDLKSK 175

Query: 178 G 176
           G
Sbjct: 176 G 176


>U41542-3|AAK39156.1|  403|Caenorhabditis elegans Hypothetical
           protein C07A12.7b protein.
          Length = 403

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -2

Query: 355 VLVAHRDPVGDLVTLVGPVAD-HLVLSVHIVAVAEARIQSPVDDTPLAPVVDMFDQLSSD 179
           VLV ++D V DL+ L+GP  D   ++   ++++ +A   +   D  LA VV  +D L S 
Sbjct: 116 VLVCNKDFVQDLIKLIGPKFDAPQIIQERVLSLIQAWADAFRGDPTLAGVVQSYDDLKSK 175

Query: 178 G 176
           G
Sbjct: 176 G 176


>AF025464-2|AAN84804.1|  496|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform a protein.
          Length = 496

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = +1

Query: 229 RQRGIVFGLPRLLQCEPTVPSGQQRVRQGSQDPQQDPDARRERLRHPGLHQG*LGQNSDA 408
           +QR     +PR  Q        QQ   Q SQ+P Q P+ ++ + + P L Q         
Sbjct: 186 QQRRAQTQMPRHQQQYQAPQQQQQNYHQNSQNPYQQPNYQQNQYQ-PQLQQFQQNPRQQQ 244

Query: 409 HECAHHSEQRQRYYEN 456
           H  ++  +  Q+ Y+N
Sbjct: 245 HVYSNPQQGYQQNYQN 260


>AF025464-1|AAN84805.1|  529|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform b protein.
          Length = 529

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = +1

Query: 229 RQRGIVFGLPRLLQCEPTVPSGQQRVRQGSQDPQQDPDARRERLRHPGLHQG*LGQNSDA 408
           +QR     +PR  Q        QQ   Q SQ+P Q P+ ++ + + P L Q         
Sbjct: 208 QQRRAQTQMPRHQQQYQAPQQQQQNYHQNSQNPYQQPNYQQNQYQ-PQLQQFQQNPRQQQ 266

Query: 409 HECAHHSEQRQRYYEN 456
           H  ++  +  Q+ Y+N
Sbjct: 267 HVYSNPQQGYQQNYQN 282


>Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical
           protein C03E10.5 protein.
          Length = 623

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 294 SATGPTRVTRSPTGSRCATRTTATP 368
           S+T  T VT +PT  + +T TT+TP
Sbjct: 173 SSTATTMVTSTPTTEKSSTTTTSTP 197


>Z83219-6|CAB05696.5|  351|Caenorhabditis elegans Hypothetical
           protein C31C9.4 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 101 YVTNVDLKYPYSELPYTAQYKLLKLPITGELIEHVDYWGEGSIVN 235
           Y  N+DL Y  S+ P T   + + L +  E++EHV+ +   ++ N
Sbjct: 55  YNGNLDLNYDMSQEPKTPLLQDMPLEMIEEIMEHVNLFDRVALRN 99


>Z82288-6|CAB05325.1| 1112|Caenorhabditis elegans Hypothetical protein
            ZK896.8 protein.
          Length = 1112

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 239  GLYSGFRDCYNVNRQYQVVSNGSDKGHKIPNRIPMRDE 352
            GLY+GF +C   N+ Y+V + G    + + + IP  +E
Sbjct: 944  GLYTGFDECITRNKSYKVETIGD--AYMVVSGIPEENE 979


>Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical
           protein F58G11.2 protein.
          Length = 960

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
 Frame = +1

Query: 301 RVRQGSQDPQQDP--DARRERLRHPGLHQG*LGQNSDAHECAHHSEQRQRY 447
           R  QG QD    P  D +R    H G H    GQNS  +   +  E R  Y
Sbjct: 210 RSHQGGQDRYSAPKEDNQRRYDNHQGGHDSYRGQNSGGYSGNNSGEYRNDY 260


>AB201389-1|BAE78829.1| 1113|Caenorhabditis elegans recepotor type
            guanyly cyclase protein.
          Length = 1113

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 239  GLYSGFRDCYNVNRQYQVVSNGSDKGHKIPNRIPMRDE 352
            GLY+GF +C   N+ Y+V + G    + + + IP  +E
Sbjct: 945  GLYTGFDECITRNKSYKVETIGD--AYMVVSGIPEENE 980


>AF068721-1|AAC19263.1|  369|Caenorhabditis elegans Hypothetical
           protein ZK1055.5 protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 368 RAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERVGMVVIYGM 496
           RAYI D   +   +    I+   ARD+ R+V++  G+ + Y M
Sbjct: 134 RAYIPDGEQRDYLMNKYNIVTWHARDVLRLVDDMSGISMHYAM 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,345,404
Number of Sequences: 27780
Number of extensions: 341517
Number of successful extensions: 957
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)