Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O15
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g35560.1 68414.m04415 TCP family transcription factor, putati...    31   1.3  
At1g71300.1 68414.m08228 Vps52/Sac2 family protein similar to SP...    30   1.7  
At1g23900.2 68414.m03016 gamma-adaptin, putative similar to SP|O...    30   2.2  
At1g23900.1 68414.m03015 gamma-adaptin, putative similar to SP|O...    30   2.2  
At3g24630.1 68416.m03093 hypothetical protein                          29   3.0  
At1g07990.1 68414.m00871 SIT4 phosphatase-associated family prot...    29   3.0  
At1g23935.1 68414.m03020 apoptosis inhibitory protein 5 (API5)-r...    28   6.8  
At5g38150.1 68418.m04598 expressed protein                             28   9.0  

>At1g35560.1 68414.m04415 TCP family transcription factor, putative
           similar to PCF2 (GI:2580440) and PCF1 (GI:2580438)
           [Oryza sativa]
          Length = 341

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = +1

Query: 175 PHHWRADRTCRLLGRGEYRQRGIVFGLPRLLQCEPTVPSGQQRVRQGSQDPQQDPDARRE 354
           PHH   D +   L +  +R+  + F  P  L  EP    G +  + GS+ P QDP + R 
Sbjct: 162 PHHITTDSSSSSLPK-TFREEDL-FKDPNFLDQEP----GSRSPKPGSEAPDQDPGSTRS 215

Query: 355 RLRH 366
           R ++
Sbjct: 216 RTQN 219


>At1g71300.1 68414.m08228 Vps52/Sac2 family protein similar to
           SP|P39904 SAC2 protein {Saccharomyces cerevisiae};
           contains Pfam profile PF04129: Vps52 / Sac2 family
          Length = 701

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +2

Query: 95  PNYVTNVDLKYPYSELPYTAQYKLLKLPITGELIEHVDYWGEGSI 229
           P+      LKYPY E+ + + +KLL    T E I   D++GE SI
Sbjct: 351 PHIAEASSLKYPY-EVLFRSLHKLLMDTATSEYIFCEDFFGEQSI 394


>At1g23900.2 68414.m03016 gamma-adaptin, putative similar to
           SP|O43747 Adapter-related protein complex 1 gamma 1
           subunit (Gamma-adaptin) (Clathrin assembly protein
           complex 1 gamma-1 large chain) {Homo sapiens}; contains
           Pfam profiles PF01602: Adaptin N terminal region,
           PF02883: Adaptin C-terminal domain
          Length = 876

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -2

Query: 340 RDPVGDLVTLVGPVADHLVLSVHIVAVAEARIQSPVDDTPLAPVVDMFDQLSSD 179
           R PV D  T     A     SV  +A     +Q+ V+  P+AP+VD+ D  S D
Sbjct: 589 RMPVLDEATFNVRRAGSFPASVSTMAKPSVSLQNGVEKLPVAPLVDLLDLDSDD 642


>At1g23900.1 68414.m03015 gamma-adaptin, putative similar to
           SP|O43747 Adapter-related protein complex 1 gamma 1
           subunit (Gamma-adaptin) (Clathrin assembly protein
           complex 1 gamma-1 large chain) {Homo sapiens}; contains
           Pfam profiles PF01602: Adaptin N terminal region,
           PF02883: Adaptin C-terminal domain
          Length = 876

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -2

Query: 340 RDPVGDLVTLVGPVADHLVLSVHIVAVAEARIQSPVDDTPLAPVVDMFDQLSSD 179
           R PV D  T     A     SV  +A     +Q+ V+  P+AP+VD+ D  S D
Sbjct: 589 RMPVLDEATFNVRRAGSFPASVSTMAKPSVSLQNGVEKLPVAPLVDLLDLDSDD 642


>At3g24630.1 68416.m03093 hypothetical protein
          Length = 724

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/61 (27%), Positives = 37/61 (60%)
 Frame = +2

Query: 272 VNRQYQVVSNGSDKGHKIPNRIPMRDENDCDTRAYIKDDSVKIVTLMSAPIIPNSARDIT 451
           +N++    +NGS+K  K+P R+  +D+   +    ++++  K++ LMS    P++A+ +T
Sbjct: 360 INQRKDHQANGSNK-MKLPLRMTKKDKEPKEMVPKVEENEGKVIKLMS----PSNAKVLT 414

Query: 452 R 454
           R
Sbjct: 415 R 415


>At1g07990.1 68414.m00871 SIT4 phosphatase-associated family protein
           contains Pfam profile: PF04499 SIT4
           phosphatase-associated protein
          Length = 802

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/83 (26%), Positives = 36/83 (43%)
 Frame = +2

Query: 194 IEHVDYWGEGSIVNGGLYSGFRDCYNVNRQYQVVSNGSDKGHKIPNRIPMRDENDCDTRA 373
           +E+V+ WG G      L    RD    +R Y V +  ++       +I   D+N+ D  A
Sbjct: 487 VENVNRWGCGRPTT--LQDRTRDSDEEDRDYDVAALANNLSQAFRYKIYGNDDNEEDHNA 544

Query: 374 YIKDDSVKIVTLMSAPIIPNSAR 442
             +DD        SA ++ +S R
Sbjct: 545 LDRDDDDVYFDDESAEVVISSLR 567


>At1g23935.1 68414.m03020 apoptosis inhibitory protein 5
           (API5)-related contains weak hit to Pfam profile
           PF05918: Apoptosis inhibitory protein 5 (API5)
          Length = 660

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 664 VLDQQIHKKLLVEENHVRVHHC 599
           +LD+   KK+LV+  H RVHHC
Sbjct: 401 ILDRNGEKKILVDR-HGRVHHC 421


>At5g38150.1 68418.m04598 expressed protein
          Length = 574

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 335 IPMRDENDCDTRAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERV 472
           I  RDE  C  +  +++D VKI  L S  +I  S  ++  I  ER+
Sbjct: 294 IRARDETACLGKI-LREDDVKIEKLNSKILIEKSKLEVVSIAEERI 338


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,395,647
Number of Sequences: 28952
Number of extensions: 319680
Number of successful extensions: 893
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)