Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_O13
(825 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70755-3|CAA94782.1| 475|Caenorhabditis elegans Hypothetical pr... 164 6e-41
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho... 89 4e-18
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi... 89 4e-18
U10402-9|AAA19065.1| 892|Caenorhabditis elegans Gro-1 operon ge... 30 2.3
AY052769-1|AAL14108.1| 885|Caenorhabditis elegans GOP-1 protein. 30 2.3
AF039718-6|AAB96743.1| 249|Caenorhabditis elegans Hypothetical ... 30 2.3
AF038611-7|AAB92040.1| 466|Caenorhabditis elegans Hypothetical ... 28 7.1
Z68014-2|CAA92024.1| 565|Caenorhabditis elegans Hypothetical pr... 28 9.3
AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-medi... 28 9.3
AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor med... 28 9.3
AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor med... 28 9.3
>Z70755-3|CAA94782.1| 475|Caenorhabditis elegans Hypothetical
protein K06A4.3 protein.
Length = 475
Score = 164 bits (399), Expect = 6e-41
Identities = 80/186 (43%), Positives = 112/186 (60%), Gaps = 1/186 (0%)
Frame = +1
Query: 193 PAFANVGRTAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDNRNNLSWDIHYWI 372
PA A +G+ G+ +WRI F PV + D G FY GD+YI L D WD+H+W+
Sbjct: 8 PALAEIGKKNGLLVWRINKFVLEPVPEVDHGVFYIGDAYIALYQKYDG----CWDVHFWL 63
Query: 373 GRESTQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLNYLEGGNPSGF 552
G+ ++ DE G AAI TV +DD GG QHRE +ES LFLSYF + Y+ GG SG+
Sbjct: 64 GKNASTDEIGVAAIKTVEIDDSLGGIPTQHREIQNYESPLFLSYFPDGIRYVSGGYESGY 123
Query: 553 NHVVTNAGAQK-RMFQVKGKRDVRVRQVDPXIASMNKGDVFVLDLXNDIYVFVGXKAKNV 729
HV K +F KGKR+VR +V+ + S+N GDVF+LDL D+YV++ ++ +
Sbjct: 124 RHVDDQFKNWKPHLFHCKGKRNVRCTEVECEVNSLNLGDVFILDLGKDLYVWMPPESGRL 183
Query: 730 EXLKAI 747
E +K +
Sbjct: 184 ERIKGM 189
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 664 DVFVLDLXNDIYVFVGXKAKNVEXLKAI 747
DV +LD N IYV+VG A E +A+
Sbjct: 388 DVMILDALNSIYVWVGANANANEKKEAL 415
>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I homolog
protein.
Length = 1257
Score = 89.0 bits (211), Expect = 4e-18
Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Frame = +1
Query: 205 NVGRTAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDNRNNLSWDIHYWIGRES 384
+VG G+ +W I+NF P + + G+FY D+Y++L+TT + L I YW+G +
Sbjct: 503 DVGSDEGMWVWEIENFYPSIMDEAFHGQFYDADAYLVLKTTREASGQLRHAIFYWLGEHA 562
Query: 385 TQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLNYLEGGNP-SGFNHV 561
+ D+ +A+ VGL + RE M E+ FL+ F + Y+EGG SGF +
Sbjct: 563 SLDKGMCSAVHAVGLRNHLNATCRTQREEMNDETEEFLTLFGEEIVYIEGGRTISGF-YT 621
Query: 562 VTNAGAQKRMFQ--VKGKRDVRVRQVDPXIASMNKGDVFVLDLXNDIYVFVGXKAK 723
R+++ V G V + V + S++ F+LD I+++ G K++
Sbjct: 622 TEKPAHLTRLYRAGVNGTA-VEMEPVPLSVESLDPRFCFLLDAGETIWIWSGYKSR 676
>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
flightless) homologprotein 1 protein.
Length = 1257
Score = 89.0 bits (211), Expect = 4e-18
Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Frame = +1
Query: 205 NVGRTAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDNRNNLSWDIHYWIGRES 384
+VG G+ +W I+NF P + + G+FY D+Y++L+TT + L I YW+G +
Sbjct: 503 DVGSDEGMWVWEIENFYPSIMDEAFHGQFYDADAYLVLKTTREASGQLRHAIFYWLGEHA 562
Query: 385 TQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLNYLEGGNP-SGFNHV 561
+ D+ +A+ VGL + RE M E+ FL+ F + Y+EGG SGF +
Sbjct: 563 SLDKGMCSAVHAVGLRNHLNATCRTQREEMNDETEEFLTLFGEEIVYIEGGRTISGF-YT 621
Query: 562 VTNAGAQKRMFQ--VKGKRDVRVRQVDPXIASMNKGDVFVLDLXNDIYVFVGXKAK 723
R+++ V G V + V + S++ F+LD I+++ G K++
Sbjct: 622 TEKPAHLTRLYRAGVNGTA-VEMEPVPLSVESLDPRFCFLLDAGETIWIWSGYKSR 676
>U10402-9|AAA19065.1| 892|Caenorhabditis elegans Gro-1 operon gene
protein 1 protein.
Length = 892
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -2
Query: 218 VLPTLAKAGWTLALSRAFLSDSDVIGPLIS*GLVAVRAQTDPSKTKRRH 72
V P KAGW + L D+ + G ++ V + PS+ K+RH
Sbjct: 726 VEPDSRKAGWAIVRFVGLLQDTTINGDSTDSKVLHVVVEGQPSRIKKRH 774
>AY052769-1|AAL14108.1| 885|Caenorhabditis elegans GOP-1 protein.
Length = 885
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -2
Query: 218 VLPTLAKAGWTLALSRAFLSDSDVIGPLIS*GLVAVRAQTDPSKTKRRH 72
V P KAGW + L D+ + G ++ V + PS+ K+RH
Sbjct: 719 VEPDSRKAGWAIVRFVGLLQDTTINGDSTDSKVLHVVVEGQPSRIKKRH 767
>AF039718-6|AAB96743.1| 249|Caenorhabditis elegans Hypothetical
protein T12F5.1 protein.
Length = 249
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 112 TATKPQEISGPITSLSDKNARDKAKVHPAFANVGRTAGVQIWRIQNFEPIPVAQK 276
T K QE+ GP+ D+ D AK ++ R G QNF+ I + +K
Sbjct: 171 TPEKGQEVEGPVEEFDDETNEDVAKAR-SYNPAARKLGGSSKSDQNFQKINLRKK 224
>AF038611-7|AAB92040.1| 466|Caenorhabditis elegans Hypothetical
protein E04A4.6 protein.
Length = 466
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 208 VGRTAGVQIWRIQNFEPIPVAQKDIGKFYKG 300
VG AG Q +R++ P+P A +G Y G
Sbjct: 259 VGYKAGEQTYRVKGSIPVPFAVPTLGNCYSG 289
>Z68014-2|CAA92024.1| 565|Caenorhabditis elegans Hypothetical
protein W04G3.2 protein.
Length = 565
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 264 GYWFEVLYSPYLHTG-CSADIGKSRVDLSFVTGVFI 160
G W++V+YSP + TG CS K D TG +
Sbjct: 402 GQWYQVIYSPPVSTGPCSMVSYKKLSDNGEATGSIV 437
>AF357877-1|AAK27715.1| 835|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform II protein.
Length = 835
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 164 KTPVTKLRSTRLLPMSAEQPVCKYGEYRTSNQYP 265
+TPV K+R+ + +P++A++P+ + R S P
Sbjct: 222 ETPVPKMRAQQQVPVAADRPIRRLSIARASMMTP 255
>AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform a protein.
Length = 786
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 164 KTPVTKLRSTRLLPMSAEQPVCKYGEYRTSNQYP 265
+TPV K+R+ + +P++A++P+ + R S P
Sbjct: 173 ETPVPKMRAQQQVPVAADRPIRRLSIARASMMTP 206
>AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform b protein.
Length = 835
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 164 KTPVTKLRSTRLLPMSAEQPVCKYGEYRTSNQYP 265
+TPV K+R+ + +P++A++P+ + R S P
Sbjct: 222 ETPVPKMRAQQQVPVAADRPIRRLSIARASMMTP 255
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,449,830
Number of Sequences: 27780
Number of extensions: 372728
Number of successful extensions: 981
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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