BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_O13 (825 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z70755-3|CAA94782.1| 475|Caenorhabditis elegans Hypothetical pr... 164 6e-41 U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho... 89 4e-18 L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi... 89 4e-18 U10402-9|AAA19065.1| 892|Caenorhabditis elegans Gro-1 operon ge... 30 2.3 AY052769-1|AAL14108.1| 885|Caenorhabditis elegans GOP-1 protein. 30 2.3 AF039718-6|AAB96743.1| 249|Caenorhabditis elegans Hypothetical ... 30 2.3 AF038611-7|AAB92040.1| 466|Caenorhabditis elegans Hypothetical ... 28 7.1 Z68014-2|CAA92024.1| 565|Caenorhabditis elegans Hypothetical pr... 28 9.3 AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-medi... 28 9.3 AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor med... 28 9.3 AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor med... 28 9.3 >Z70755-3|CAA94782.1| 475|Caenorhabditis elegans Hypothetical protein K06A4.3 protein. Length = 475 Score = 164 bits (399), Expect = 6e-41 Identities = 80/186 (43%), Positives = 112/186 (60%), Gaps = 1/186 (0%) Frame = +1 Query: 193 PAFANVGRTAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDNRNNLSWDIHYWI 372 PA A +G+ G+ +WRI F PV + D G FY GD+YI L D WD+H+W+ Sbjct: 8 PALAEIGKKNGLLVWRINKFVLEPVPEVDHGVFYIGDAYIALYQKYDG----CWDVHFWL 63 Query: 373 GRESTQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLNYLEGGNPSGF 552 G+ ++ DE G AAI TV +DD GG QHRE +ES LFLSYF + Y+ GG SG+ Sbjct: 64 GKNASTDEIGVAAIKTVEIDDSLGGIPTQHREIQNYESPLFLSYFPDGIRYVSGGYESGY 123 Query: 553 NHVVTNAGAQK-RMFQVKGKRDVRVRQVDPXIASMNKGDVFVLDLXNDIYVFVGXKAKNV 729 HV K +F KGKR+VR +V+ + S+N GDVF+LDL D+YV++ ++ + Sbjct: 124 RHVDDQFKNWKPHLFHCKGKRNVRCTEVECEVNSLNLGDVFILDLGKDLYVWMPPESGRL 183 Query: 730 EXLKAI 747 E +K + Sbjct: 184 ERIKGM 189 Score = 28.3 bits (60), Expect = 7.1 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +1 Query: 664 DVFVLDLXNDIYVFVGXKAKNVEXLKAI 747 DV +LD N IYV+VG A E +A+ Sbjct: 388 DVMILDALNSIYVWVGANANANEKKEAL 415 >U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I homolog protein. Length = 1257 Score = 89.0 bits (211), Expect = 4e-18 Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 3/176 (1%) Frame = +1 Query: 205 NVGRTAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDNRNNLSWDIHYWIGRES 384 +VG G+ +W I+NF P + + G+FY D+Y++L+TT + L I YW+G + Sbjct: 503 DVGSDEGMWVWEIENFYPSIMDEAFHGQFYDADAYLVLKTTREASGQLRHAIFYWLGEHA 562 Query: 385 TQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLNYLEGGNP-SGFNHV 561 + D+ +A+ VGL + RE M E+ FL+ F + Y+EGG SGF + Sbjct: 563 SLDKGMCSAVHAVGLRNHLNATCRTQREEMNDETEEFLTLFGEEIVYIEGGRTISGF-YT 621 Query: 562 VTNAGAQKRMFQ--VKGKRDVRVRQVDPXIASMNKGDVFVLDLXNDIYVFVGXKAK 723 R+++ V G V + V + S++ F+LD I+++ G K++ Sbjct: 622 TEKPAHLTRLYRAGVNGTA-VEMEPVPLSVESLDPRFCFLLDAGETIWIWSGYKSR 676 >L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila flightless) homologprotein 1 protein. Length = 1257 Score = 89.0 bits (211), Expect = 4e-18 Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 3/176 (1%) Frame = +1 Query: 205 NVGRTAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDNRNNLSWDIHYWIGRES 384 +VG G+ +W I+NF P + + G+FY D+Y++L+TT + L I YW+G + Sbjct: 503 DVGSDEGMWVWEIENFYPSIMDEAFHGQFYDADAYLVLKTTREASGQLRHAIFYWLGEHA 562 Query: 385 TQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLNYLEGGNP-SGFNHV 561 + D+ +A+ VGL + RE M E+ FL+ F + Y+EGG SGF + Sbjct: 563 SLDKGMCSAVHAVGLRNHLNATCRTQREEMNDETEEFLTLFGEEIVYIEGGRTISGF-YT 621 Query: 562 VTNAGAQKRMFQ--VKGKRDVRVRQVDPXIASMNKGDVFVLDLXNDIYVFVGXKAK 723 R+++ V G V + V + S++ F+LD I+++ G K++ Sbjct: 622 TEKPAHLTRLYRAGVNGTA-VEMEPVPLSVESLDPRFCFLLDAGETIWIWSGYKSR 676 >U10402-9|AAA19065.1| 892|Caenorhabditis elegans Gro-1 operon gene protein 1 protein. Length = 892 Score = 29.9 bits (64), Expect = 2.3 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = -2 Query: 218 VLPTLAKAGWTLALSRAFLSDSDVIGPLIS*GLVAVRAQTDPSKTKRRH 72 V P KAGW + L D+ + G ++ V + PS+ K+RH Sbjct: 726 VEPDSRKAGWAIVRFVGLLQDTTINGDSTDSKVLHVVVEGQPSRIKKRH 774 >AY052769-1|AAL14108.1| 885|Caenorhabditis elegans GOP-1 protein. Length = 885 Score = 29.9 bits (64), Expect = 2.3 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = -2 Query: 218 VLPTLAKAGWTLALSRAFLSDSDVIGPLIS*GLVAVRAQTDPSKTKRRH 72 V P KAGW + L D+ + G ++ V + PS+ K+RH Sbjct: 719 VEPDSRKAGWAIVRFVGLLQDTTINGDSTDSKVLHVVVEGQPSRIKKRH 767 >AF039718-6|AAB96743.1| 249|Caenorhabditis elegans Hypothetical protein T12F5.1 protein. Length = 249 Score = 29.9 bits (64), Expect = 2.3 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = +1 Query: 112 TATKPQEISGPITSLSDKNARDKAKVHPAFANVGRTAGVQIWRIQNFEPIPVAQK 276 T K QE+ GP+ D+ D AK ++ R G QNF+ I + +K Sbjct: 171 TPEKGQEVEGPVEEFDDETNEDVAKAR-SYNPAARKLGGSSKSDQNFQKINLRKK 224 >AF038611-7|AAB92040.1| 466|Caenorhabditis elegans Hypothetical protein E04A4.6 protein. Length = 466 Score = 28.3 bits (60), Expect = 7.1 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +1 Query: 208 VGRTAGVQIWRIQNFEPIPVAQKDIGKFYKG 300 VG AG Q +R++ P+P A +G Y G Sbjct: 259 VGYKAGEQTYRVKGSIPVPFAVPTLGNCYSG 289 >Z68014-2|CAA92024.1| 565|Caenorhabditis elegans Hypothetical protein W04G3.2 protein. Length = 565 Score = 27.9 bits (59), Expect = 9.3 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = -1 Query: 264 GYWFEVLYSPYLHTG-CSADIGKSRVDLSFVTGVFI 160 G W++V+YSP + TG CS K D TG + Sbjct: 402 GQWYQVIYSPPVSTGPCSMVSYKKLSDNGEATGSIV 437 >AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-mediated endocytosis 1isoform II protein. Length = 835 Score = 27.9 bits (59), Expect = 9.3 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = +2 Query: 164 KTPVTKLRSTRLLPMSAEQPVCKYGEYRTSNQYP 265 +TPV K+R+ + +P++A++P+ + R S P Sbjct: 222 ETPVPKMRAQQQVPVAADRPIRRLSIARASMMTP 255 >AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor mediated endocytosis protein1, isoform a protein. Length = 786 Score = 27.9 bits (59), Expect = 9.3 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = +2 Query: 164 KTPVTKLRSTRLLPMSAEQPVCKYGEYRTSNQYP 265 +TPV K+R+ + +P++A++P+ + R S P Sbjct: 173 ETPVPKMRAQQQVPVAADRPIRRLSIARASMMTP 206 >AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor mediated endocytosis protein1, isoform b protein. Length = 835 Score = 27.9 bits (59), Expect = 9.3 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = +2 Query: 164 KTPVTKLRSTRLLPMSAEQPVCKYGEYRTSNQYP 265 +TPV K+R+ + +P++A++P+ + R S P Sbjct: 222 ETPVPKMRAQQQVPVAADRPIRRLSIARASMMTP 255 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,449,830 Number of Sequences: 27780 Number of extensions: 372728 Number of successful extensions: 981 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 927 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 979 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 2040452812 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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