SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O12
         (839 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx mori...   109   8e-23
UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9; Obtectomera...    71   4e-11
UniRef50_UPI0000D5776D Cluster: PREDICTED: similar to Hypothetic...    49   1e-04
UniRef50_Q9N9Z1 Cluster: Endonuclease/reverse transcriptase; n=1...    49   2e-04
UniRef50_UPI0000D57891 Cluster: PREDICTED: similar to Hypothetic...    48   2e-04
UniRef50_UPI00015B460B Cluster: PREDICTED: similar to Putative 1...    46   0.001
UniRef50_UPI0000D5790F Cluster: PREDICTED: similar to RNA-direct...    45   0.002
UniRef50_Q868S6 Cluster: Reverse transcriptase; n=2; Culicidae|R...    44   0.004
UniRef50_UPI0000D578E5 Cluster: PREDICTED: similar to Hypothetic...    42   0.025
UniRef50_UPI00015B47DE Cluster: PREDICTED: similar to has homolo...    41   0.045
UniRef50_UPI0000D578E3 Cluster: PREDICTED: similar to Hypothetic...    40   0.059
UniRef50_Q868S4 Cluster: Reverse transcriptase; n=1; Anopheles g...    40   0.10 
UniRef50_Q868S0 Cluster: Reverse transcriptase; n=2; Anopheles g...    39   0.14 
UniRef50_Q9BLI5 Cluster: TRAS3 protein; n=7; Bombycoidea|Rep: TR...    38   0.24 
UniRef50_P16425 Cluster: Putative 115 kDa protein in type-1 retr...    38   0.31 
UniRef50_UPI00005A02EC Cluster: PREDICTED: hypothetical protein ...    37   0.72 
UniRef50_UPI00015B47FC Cluster: PREDICTED: similar to non-LTR re...    36   1.3  
UniRef50_Q868R0 Cluster: Reverse transcriptase; n=1; Anopheles g...    36   1.3  
UniRef50_Q868S2 Cluster: Reverse transcriptase; n=4; Anopheles g...    36   1.7  
UniRef50_Q03272 Cluster: Retrovirus-related Pol polyprotein from...    36   1.7  
UniRef50_A0VI04 Cluster: Putative uncharacterized protein; n=1; ...    35   2.9  
UniRef50_Q0UJP4 Cluster: Predicted protein; n=1; Phaeosphaeria n...    35   2.9  
UniRef50_UPI0000EBE020 Cluster: PREDICTED: similar to coiled-coi...    34   3.9  
UniRef50_UPI0000E1FA77 Cluster: PREDICTED: hypothetical protein;...    34   3.9  
UniRef50_Q868Q6 Cluster: Reverse transcriptase; n=3; Anopheles g...    34   3.9  
UniRef50_Q3SF04 Cluster: Putative uncharacterized protein; n=1; ...    33   6.8  
UniRef50_A3Q0V1 Cluster: Putative esterase; n=5; Mycobacterium|R...    33   6.8  
UniRef50_Q5N7A6 Cluster: Epstein-Barr virus EBNA-1-like protein;...    33   6.8  
UniRef50_Q7NXK3 Cluster: Putative uncharacterized protein; n=1; ...    33   8.9  
UniRef50_Q1R069 Cluster: Twin-arginine translocation pathway sig...    33   8.9  
UniRef50_A7CFA3 Cluster: Putative uncharacterized protein precur...    33   8.9  
UniRef50_A5P062 Cluster: Putative uncharacterized protein; n=2; ...    33   8.9  
UniRef50_A4RQ84 Cluster: Putative uncharacterized protein; n=1; ...    33   8.9  
UniRef50_A1CQX4 Cluster: Putative uncharacterized protein; n=1; ...    33   8.9  
UniRef50_Q03277 Cluster: Retrovirus-related Pol polyprotein from...    33   8.9  

>UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx mori|Rep:
            Reverse transcriptase - Bombyx mori (Silk moth)
          Length = 1076

 Score =  109 bits (262), Expect = 8e-23
 Identities = 53/94 (56%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
 Frame = +1

Query: 277  PYGATPXTRQNVAA-LRRPQRAIAVKAIRGYRTVSFEAACLLAGAPPWDLEAEALAADYR 453
            P  A P  R  +A  LRRPQR +A++ IRGYRTVSFEAAC+LAG PPW+LEAE+LAADYR
Sbjct: 824  PVWAEPRNRATMARFLRRPQRTVAIRVIRGYRTVSFEAACVLAGTPPWELEAESLAADYR 883

Query: 454  WRXDLXXXXXXXXXXXXXXXXXLQSRRSVLEAWS 555
            WR +L                   SRRSVLE+WS
Sbjct: 884  WRSELRARGVARVPESELRARKAHSRRSVLESWS 917



 Score = 82.2 bits (194), Expect = 1e-14
 Identities = 37/41 (90%), Positives = 38/41 (92%)
 Frame = +3

Query: 162 LMATAGSLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVW 284
           LM TAGSLSRLLPN+GGPDQV RRLY GVVRSMALYGAPVW
Sbjct: 786 LMGTAGSLSRLLPNIGGPDQVVRRLYAGVVRSMALYGAPVW 826



 Score = 46.0 bits (104), Expect = 0.001
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = +2

Query: 65  RSGVGVTGLRYLGLKLDGRWNFRAHFEKLGPRADG 169
           R GVGV  L+YLGL LD RW FRAHF +L PR  G
Sbjct: 755 RIGVGVQ-LKYLGLVLDSRWAFRAHFAELVPRLMG 788



 Score = 35.9 bits (79), Expect = 1.3
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +3

Query: 558 RLADPSAGLRTVXAVRPVLXDWV 626
           RLA+P+ GLRTV AV PV  DWV
Sbjct: 919 RLANPTWGLRTVEAVYPVFDDWV 941


>UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9;
           Obtectomera|Rep: Reverse transcriptase - Papilio xuthus
          Length = 1053

 Score = 70.9 bits (166), Expect = 4e-11
 Identities = 31/47 (65%), Positives = 38/47 (80%)
 Frame = +1

Query: 319 LRRPQRAIAVKAIRGYRTVSFEAACLLAGAPPWDLEAEALAADYRWR 459
           L RPQR +A++ IRGYRTVS++AAC LAG+ PW LEAE LAA + WR
Sbjct: 816 LHRPQRTMAIRMIRGYRTVSYDAACTLAGSLPWVLEAEILAAIHTWR 862



 Score = 66.5 bits (155), Expect = 8e-10
 Identities = 31/45 (68%), Positives = 34/45 (75%)
 Frame = +3

Query: 162 LMATAGSLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCHAL 296
           LM TA +L  LLPNVGGP    RRL+ GVV+SMALYGAPVW  AL
Sbjct: 764 LMRTAAALGSLLPNVGGPKAACRRLFTGVVQSMALYGAPVWSGAL 808



 Score = 46.0 bits (104), Expect = 0.001
 Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
 Frame = +2

Query: 35  GAHLVIRRRPRSGVGV---TGLRYLGLKLDGRWNFRAHFEKLGPR 160
           GAH+V+      GV +   + +RYLGL LDGRW F  HF +LGP+
Sbjct: 724 GAHIVV-----GGVNINIQSHIRYLGLMLDGRWTFEGHFRQLGPK 763


>UniRef50_UPI0000D5776D Cluster: PREDICTED: similar to Hypothetical
           115 kDa protein in type I retrotransposable element R1DM
           (ORF 2); n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to Hypothetical 115 kDa protein in type I
           retrotransposable element R1DM (ORF 2) - Tribolium
           castaneum
          Length = 973

 Score = 49.2 bits (112), Expect = 1e-04
 Identities = 22/42 (52%), Positives = 27/42 (64%)
 Frame = +3

Query: 171 TAGSLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCHAL 296
           T  +LSR++PN+GGP    R+L  GV  SM LYG  VW  AL
Sbjct: 726 TISALSRIMPNIGGPGSNRRKLLAGVATSMLLYGCEVWHTAL 767



 Score = 37.1 bits (82), Expect = 0.55
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = +1

Query: 298 TRQNVAALRRPQRAIAVKAIRGYRTVSFEAACLLAGAPPWDLEAE 432
           T++NV  L    R I  +    YRTVS EAA ++ G PP  L  E
Sbjct: 769 TKKNVVVLESTHRRILARVACAYRTVSTEAAQVITGVPPARLLVE 813


>UniRef50_Q9N9Z1 Cluster: Endonuclease/reverse transcriptase; n=1;
           Drosophila melanogaster|Rep: Endonuclease/reverse
           transcriptase - Drosophila melanogaster (Fruit fly)
          Length = 989

 Score = 48.8 bits (111), Expect = 2e-04
 Identities = 20/38 (52%), Positives = 28/38 (73%)
 Frame = +3

Query: 171 TAGSLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVW 284
           TA +L+R++PNVGGP   ARRL + V ++  LY AP+W
Sbjct: 744 TAAALARIMPNVGGPRLPARRLLVAVSKATLLYAAPIW 781



 Score = 36.3 bits (80), Expect = 0.96
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +1

Query: 265 YTARPYGATPXTRQNVAALRRPQRAIAVKAIRGYRTVSFEAACLLAGAPPWDLE 426
           Y A  +      +  + + R   R +A++ IRG+RT+S +AA  L+G  P DL+
Sbjct: 776 YAAPIWSCVSTKKTYLDSARAVSRTMALRLIRGFRTISDDAAHALSGITPIDLD 829


>UniRef50_UPI0000D57891 Cluster: PREDICTED: similar to Hypothetical
            115 kDa protein in type I retrotransposable element R1DM
            (ORF 2), partial; n=1; Tribolium castaneum|Rep:
            PREDICTED: similar to Hypothetical 115 kDa protein in
            type I retrotransposable element R1DM (ORF 2), partial -
            Tribolium castaneum
          Length = 2033

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 20/52 (38%), Positives = 32/52 (61%)
 Frame = +3

Query: 141  LRSWALVLMATAGSLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCHAL 296
            ++  A+ +  T  +LS ++PN+GGP    RR+   V  S  LYGAP+W +A+
Sbjct: 1370 IQQTAIKVEKTITALSSVMPNIGGPSSSKRRMLSSVAHSAMLYGAPIWHNAM 1421


>UniRef50_UPI00015B460B Cluster: PREDICTED: similar to Putative 115
           kDa protein in type-1 retrotransposable element R1DM
           (Putative 115 kDa protein in type I retrotransposable
           element R1DM) (ORF 2); n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to Putative 115 kDa protein in type-1
           retrotransposable element R1DM (Putative 115 kDa protein
           in type I retrotransposable element R1DM) (ORF 2) -
           Nasonia vitripennis
          Length = 680

 Score = 46.0 bits (104), Expect = 0.001
 Identities = 24/50 (48%), Positives = 32/50 (64%)
 Frame = +1

Query: 319 LRRPQRAIAVKAIRGYRTVSFEAACLLAGAPPWDLEAEALAADYRWRXDL 468
           L R QR +   ++R  RTVS EA  ++AG+ PWDLE   L+A Y+ R DL
Sbjct: 448 LNRCQRYVLYASVRVCRTVSTEAMQVIAGSLPWDLECLRLSALYKVRKDL 497


>UniRef50_UPI0000D5790F Cluster: PREDICTED: similar to RNA-directed
           DNA polymerase from mobile element jockey (Reverse
           transcriptase); n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to RNA-directed DNA polymerase from mobile
           element jockey (Reverse transcriptase) - Tribolium
           castaneum
          Length = 932

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 19/38 (50%), Positives = 24/38 (63%)
 Frame = +3

Query: 171 TAGSLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVW 284
           T  +LSRL+PN GG     RR+ + V RS  LYGA +W
Sbjct: 683 TMAALSRLMPNTGGAKPYRRRMLVAVARSQILYGAEIW 720



 Score = 33.5 bits (73), Expect = 6.8
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +1

Query: 265 YTARPYGATPXTRQNVAALRRPQRAIAVKAIRGYRTVSFEAACLLAGAPPWDLEAE 432
           Y A  +G+     +++  L R QR   ++    YRT S EA  ++AG  P  L  E
Sbjct: 715 YGAEIWGSRHLKSKSLEKLERAQRTALLRVTSAYRTTSNEALQVIAGTKPMALAIE 770


>UniRef50_Q868S6 Cluster: Reverse transcriptase; n=2; Culicidae|Rep:
           Reverse transcriptase - Anopheles gambiae (African
           malaria mosquito)
          Length = 1049

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = +3

Query: 162 LMATAGSLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCHAL 296
           +M    +L+   PN+GGP    RRL+     S+  YGAPVW H L
Sbjct: 790 VMKAINALAAFTPNIGGPCSSIRRLHANCAISVLRYGAPVWAHIL 834



 Score = 34.7 bits (76), Expect = 2.9
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = +1

Query: 301 RQNVAALRRPQRAIAVKAIRGYRTVSFEAACLLAGAPPWDLEAEALAADYR 453
           +Q+   + +  R +A++    YRT+S+EA C++A   P  +  E  + ++R
Sbjct: 837 KQHQNTVNKVHRKLAMRVTSAYRTISYEAVCVIASMMPLCITLEEDSKNFR 887


>UniRef50_UPI0000D578E5 Cluster: PREDICTED: similar to Hypothetical
           115 kDa protein in type I retrotransposable element R1DM
           (ORF 2); n=6; Tribolium castaneum|Rep: PREDICTED:
           similar to Hypothetical 115 kDa protein in type I
           retrotransposable element R1DM (ORF 2) - Tribolium
           castaneum
          Length = 1057

 Score = 41.5 bits (93), Expect = 0.025
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +3

Query: 174 AGSLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVW 284
           A  L RL+PNV GP    R++   VV S+ +Y AP+W
Sbjct: 672 AAMLGRLMPNVKGPSPSKRKVMAEVVNSIVMYAAPIW 708


>UniRef50_UPI00015B47DE Cluster: PREDICTED: similar to has homology
           with reverse transcriptase; 5 end of coding region for
           ORF2 undetermined; putative; n=3; Nasonia
           vitripennis|Rep: PREDICTED: similar to has homology with
           reverse transcriptase; 5 end of coding region for ORF2
           undetermined; putative - Nasonia vitripennis
          Length = 883

 Score = 40.7 bits (91), Expect = 0.045
 Identities = 19/38 (50%), Positives = 22/38 (57%)
 Frame = +3

Query: 183 LSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCHAL 296
           LSRL+ NV GP    RRL M    S+ LYGA VW   +
Sbjct: 168 LSRLMANVRGPRPTVRRLLMANTNSILLYGAEVWADVM 205


>UniRef50_UPI0000D578E3 Cluster: PREDICTED: similar to Hypothetical
           115 kDa protein in type I retrotransposable element R1DM
           (ORF 2); n=2; Tribolium castaneum|Rep: PREDICTED:
           similar to Hypothetical 115 kDa protein in type I
           retrotransposable element R1DM (ORF 2) - Tribolium
           castaneum
          Length = 1208

 Score = 40.3 bits (90), Expect = 0.059
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +3

Query: 183 LSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVW 284
           L RL+PNV GP    R++   VV S+ +Y AP+W
Sbjct: 744 LGRLMPNVKGPSPSKRKVMAEVVNSIVMYAAPIW 777


>UniRef50_Q868S4 Cluster: Reverse transcriptase; n=1; Anopheles
           gambiae|Rep: Reverse transcriptase - Anopheles gambiae
           (African malaria mosquito)
          Length = 973

 Score = 39.5 bits (88), Expect = 0.10
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 180 SLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCHAL 296
           SL +++PN+GGP    RRL   V  S   Y A +W H L
Sbjct: 735 SLIQIMPNIGGPKSSWRRLLADVAFSRLRYNAAIWAHVL 773



 Score = 34.3 bits (75), Expect = 3.9
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 256 RWHYTARPYGATPXTRQNVAALRRPQRAIAVKAIRGYRTVSFEAACLLAGAPP 414
           R  Y A  +      ++N     R  R +A++ +R Y+T+S  A C++A   P
Sbjct: 761 RLRYNAAIWAHVLVLKENRQLANRVHRLLAMRVVRAYKTISHVAVCVIASMVP 813


>UniRef50_Q868S0 Cluster: Reverse transcriptase; n=2; Anopheles
           gambiae|Rep: Reverse transcriptase - Anopheles gambiae
           (African malaria mosquito)
          Length = 1009

 Score = 39.1 bits (87), Expect = 0.14
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 180 SLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCHAL 296
           +L R++PN  GP    RR+    V +   Y +P+WCH L
Sbjct: 739 TLVRMMPNKAGPSSNVRRVIALTVVAKVRYASPIWCHTL 777


>UniRef50_Q9BLI5 Cluster: TRAS3 protein; n=7; Bombycoidea|Rep: TRAS3
            protein - Bombyx mori (Silk moth)
          Length = 1682

 Score = 38.3 bits (85), Expect = 0.24
 Identities = 20/47 (42%), Positives = 25/47 (53%)
 Frame = +1

Query: 310  VAALRRPQRAIAVKAIRGYRTVSFEAACLLAGAPPWDLEAEALAADY 450
            +  L   QR IA K  + YRTVS  +A +LAG  P DL     A+ Y
Sbjct: 1298 IKQLAAVQRGIAQKVCKAYRTVSLNSALILAGMLPLDLRVREAASLY 1344


>UniRef50_P16425 Cluster: Putative 115 kDa protein in type-1
           retrotransposable element R1DM; n=13; Drosophila|Rep:
           Putative 115 kDa protein in type-1 retrotransposable
           element R1DM - Drosophila melanogaster (Fruit fly)
          Length = 1021

 Score = 37.9 bits (84), Expect = 0.31
 Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +1

Query: 298 TRQNVAALRRP---QRAIAVKAIRGYRTVSFEAACLLAGAPPWDLEAEALAADYR 453
           T + VAA RR    QR I +  +   RTVS  A  +L GAPP DL A+ LA  Y+
Sbjct: 802 TAEQVAAQRRLASCQRLILLGCLSVCRTVSTVALQVLGGAPPLDLAAKLLAIKYK 856


>UniRef50_UPI00005A02EC Cluster: PREDICTED: hypothetical protein
           XP_862750; n=1; Canis lupus familiaris|Rep: PREDICTED:
           hypothetical protein XP_862750 - Canis familiaris
          Length = 273

 Score = 36.7 bits (81), Expect = 0.72
 Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
 Frame = -1

Query: 257 RPHHPHVEAARHLIGTPDVWKEPAQRAGRCHQHEGPTSQSERGSSTDRPV*GRGTEDRSP 78
           RP  P + A   L G P  W   A R  R H+H     Q+   ++T  P      E  + 
Sbjct: 31  RPPPPQIGARASLTGLPGHWLGSALRCQRRHRHHRCLEQAVSVTTTLPP----RPETSTA 86

Query: 77  RPLIADAS*SRGGH---PSGGARPGP 9
           RPL  D S S  G    P GG   GP
Sbjct: 87  RPLRPDRSLSETGSDWPPGGGNHAGP 112


>UniRef50_UPI00015B47FC Cluster: PREDICTED: similar to non-LTR
           retrotransposon R1Bmks ORF2 protein; n=1; Nasonia
           vitripennis|Rep: PREDICTED: similar to non-LTR
           retrotransposon R1Bmks ORF2 protein - Nasonia
           vitripennis
          Length = 986

 Score = 35.9 bits (79), Expect = 1.3
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +1

Query: 271 ARPYGATPXTRQNVAALRRPQRAIAVKAIRGYRTVSFEAACLLAGAPPWDL 423
           AR  G    T Q+       QR I ++  + YRTVS +A C++A A P DL
Sbjct: 814 ARGGGDLVRTNQHRQTFLSIQRTILLRVTKAYRTVSGDALCVIARAIPLDL 864


>UniRef50_Q868R0 Cluster: Reverse transcriptase; n=1; Anopheles
           gambiae|Rep: Reverse transcriptase - Anopheles gambiae
           (African malaria mosquito)
          Length = 1173

 Score = 35.9 bits (79), Expect = 1.3
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = +3

Query: 165 MATAGSLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCHA 293
           + TA +L  L+ N  GP    RRL   VV S+  Y APVW  A
Sbjct: 776 LRTAKALGCLMRNHSGPKCAKRRLLASVVDSILRYAAPVWHEA 818


>UniRef50_Q868S2 Cluster: Reverse transcriptase; n=4; Anopheles
           gambiae|Rep: Reverse transcriptase - Anopheles gambiae
           (African malaria mosquito)
          Length = 1201

 Score = 35.5 bits (78), Expect = 1.7
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 180 SLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCHALXPPE 308
           +++RL+PN+ GP     RL   V  S   Y APVW  A+   E
Sbjct: 836 AVNRLMPNLHGPRTSMSRLLANVADSTMRYAAPVWHEAIGNQE 878



 Score = 33.5 bits (73), Expect = 6.8
 Identities = 17/32 (53%), Positives = 20/32 (62%)
 Frame = +1

Query: 319 LRRPQRAIAVKAIRGYRTVSFEAACLLAGAPP 414
           LRR QR  A+   R +RTV +E A LLAG  P
Sbjct: 883 LRRVQRKSAIGLARTFRTVRYETAVLLAGLLP 914


>UniRef50_Q03272 Cluster: Retrovirus-related Pol polyprotein from
           type-1 retrotransposable element R1 4
           (Retrovirus-related Pol polyprotein from type I
           retrotransposable element R1 4) [Includes: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease]; n=1; Nasonia
           vitripennis|Rep: Retrovirus-related Pol polyprotein from
           type-1 retrotransposable element R1 4
           (Retrovirus-related Pol polyprotein from type I
           retrotransposable element R1 4) [Includes: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] - Nasonia
           vitripennis (Parasitic wasp)
          Length = 392

 Score = 35.5 bits (78), Expect = 1.7
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +1

Query: 334 RAIAVKAIRGYRTVSFEAACLLAGAPPWDLEAEALAADYRWR 459
           R I +   R YR+ S+EAAC+LAG  P  ++     A Y  R
Sbjct: 172 RQILIAITRCYRSTSYEAACVLAGTLPICIQLRVSVAKYHLR 213


>UniRef50_A0VI04 Cluster: Putative uncharacterized protein; n=1;
           Delftia acidovorans SPH-1|Rep: Putative uncharacterized
           protein - Delftia acidovorans SPH-1
          Length = 640

 Score = 34.7 bits (76), Expect = 2.9
 Identities = 38/119 (31%), Positives = 51/119 (42%)
 Frame = -1

Query: 359 RIALTAIARCGRRSAATFWRVQGVAPYGRAV*CHRPHHPHVEAARHLIGTPDVWKEPAQR 180
           R+ L  +ARC    AA   R++G AP    + C R H P   + R   GT    + P  R
Sbjct: 300 RVRLGPLARCEAAKAAGRGRLRGRAP---LLACPRAHAP---SGR---GTGQA-RVPHAR 349

Query: 179 AGRCHQHEGPTSQSERGSSTDRPV*GRGTEDRSPRPLIADAS*SRGGHPSGGARPGPCQ 3
            G   +H  P S + RG +  R    RG  DR  +P  A  +  R   P  G    PC+
Sbjct: 350 CGLACRH--PLSGAGRGPAPHR----RGAADRWTQPGPAGHAPDRRDGPQPGRAQAPCR 402


>UniRef50_Q0UJP4 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 485

 Score = 34.7 bits (76), Expect = 2.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 7   HGPGRAPPDGCPPRDQEASAIRGRGDRSSVPRPQTGRSVELP 132
           +GP   PP    P   ++   RGRGDR   P PQ  ++   P
Sbjct: 10  YGPNNPPPPPMGPPPGKSGRARGRGDRGEPPHPQDSQTSSGP 51


>UniRef50_UPI0000EBE020 Cluster: PREDICTED: similar to coiled-coil
           domain containing 66; n=1; Bos taurus|Rep: PREDICTED:
           similar to coiled-coil domain containing 66 - Bos taurus
          Length = 492

 Score = 34.3 bits (75), Expect = 3.9
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 10  GPGRAPPDGCPPRDQEASAIRGRGDRSSVPRPQTGRSV-ELPRSL*EVGP 156
           G GR P    PP+ ++A + RGR    + PRPQ  RS   L RSL   GP
Sbjct: 238 GRGRRPRGRHPPQSRDARS-RGRSQTCAPPRPQPRRSARSLARSLALRGP 286


>UniRef50_UPI0000E1FA77 Cluster: PREDICTED: hypothetical protein;
           n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
           protein - Pan troglodytes
          Length = 113

 Score = 34.3 bits (75), Expect = 3.9
 Identities = 20/59 (33%), Positives = 24/59 (40%)
 Frame = -3

Query: 543 QHGPPRLEPPRSNXSFAGAPFPPRAEVXTPPVIGSERLRLQVPGWRPGEQARRLEGDGA 367
           + G P   PP      A  P PP      PP +G  R R +VP      +AR   G GA
Sbjct: 54  RRGAPSPPPPEPEPEPAHPPAPPPPPPEQPPSLGPRRRRGRVPAVAARARARAPAGGGA 112


>UniRef50_Q868Q6 Cluster: Reverse transcriptase; n=3; Anopheles
           gambiae|Rep: Reverse transcriptase - Anopheles gambiae
           (African malaria mosquito)
          Length = 1248

 Score = 34.3 bits (75), Expect = 3.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 183 LSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCHA 293
           ++ ++ N  GP    RRL  GV  ++  YGAP+W  A
Sbjct: 765 VTNVMRNHSGPRVAKRRLLAGVSEAIIRYGAPIWAEA 801


>UniRef50_Q3SF04 Cluster: Putative uncharacterized protein; n=1;
           Thiobacillus denitrificans ATCC 25259|Rep: Putative
           uncharacterized protein - Thiobacillus denitrificans
           (strain ATCC 25259)
          Length = 310

 Score = 33.5 bits (73), Expect = 6.8
 Identities = 24/77 (31%), Positives = 30/77 (38%)
 Frame = -1

Query: 242 HVEAARHLIGTPDVWKEPAQRAGRCHQHEGPTSQSERGSSTDRPV*GRGTEDRSPRPLIA 63
           H +AA    G  D W++ AQ  G   Q  G   +   G    R   G G  +R P     
Sbjct: 96  HDDAASWQSGAQDHWRQGAQERGGPGQ--GGYGELSYGQGGQRRGQGEGAYERGPEAFGQ 153

Query: 62  DAS*SRGGHPSGGARPG 12
               SRGG+   G  PG
Sbjct: 154 WQGGSRGGYGQPGHEPG 170


>UniRef50_A3Q0V1 Cluster: Putative esterase; n=5; Mycobacterium|Rep:
           Putative esterase - Mycobacterium sp. (strain JLS)
          Length = 450

 Score = 33.5 bits (73), Expect = 6.8
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 93  GTSASNWTVGGTSALTLRSWALVLMATAGSLSR-LLPNVGGPDQVARRLYMGVVRSMALY 269
           G     W++GGT A+ L      L +T   ++  L PN G  +Q   RLY G   + A Y
Sbjct: 291 GWGVVGWSMGGTCAVDLSVMHPELFSTFEDIAGDLTPNAGTKEQTIARLYGGNTAAWAAY 350


>UniRef50_Q5N7A6 Cluster: Epstein-Barr virus EBNA-1-like protein;
           n=1; Oryza sativa (japonica cultivar-group)|Rep:
           Epstein-Barr virus EBNA-1-like protein - Oryza sativa
           subsp. japonica (Rice)
          Length = 195

 Score = 33.5 bits (73), Expect = 6.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 152 GPRADGNGRLFEPAPSKRRGSRSGGAPPLHGGGAVDG 262
           GP  D  GR+      + +G R  G PP H GG   G
Sbjct: 46  GPNGDRGGRMTPAGGKREKGGRERGLPPCHFGGKGGG 82


>UniRef50_Q7NXK3 Cluster: Putative uncharacterized protein; n=1;
           Chromobacterium violaceum|Rep: Putative uncharacterized
           protein - Chromobacterium violaceum
          Length = 132

 Score = 33.1 bits (72), Expect = 8.9
 Identities = 20/56 (35%), Positives = 22/56 (39%)
 Frame = -1

Query: 194 EPAQRAGRCHQHEGPTSQSERGSSTDRPV*GRGTEDRSPRPLIADAS*SRGGHPSG 27
           EP QR G      GP   SE+G      + G G      R     AS S GG P G
Sbjct: 59  EPGQRPGTAAGRRGPPQLSEQGGDIRVQLVGGGAVGHGSRAGTGRASISDGGEPGG 114


>UniRef50_Q1R069 Cluster: Twin-arginine translocation pathway
           signal; n=4; Gammaproteobacteria|Rep: Twin-arginine
           translocation pathway signal - Chromohalobacter
           salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB13768)
          Length = 227

 Score = 33.1 bits (72), Expect = 8.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 519 PPRSNXSFAGAPFPPRAEVXTPPVIGSERLRLQVPGWR 406
           P  S+ S+AG+P  P  +   PP  G+ R+ L V G R
Sbjct: 43  PALSSVSYAGSPDDPDTQTDAPPAEGARRITLTVNGRR 80


>UniRef50_A7CFA3 Cluster: Putative uncharacterized protein
           precursor; n=1; Ralstonia pickettii 12D|Rep: Putative
           uncharacterized protein precursor - Ralstonia pickettii
           12D
          Length = 489

 Score = 33.1 bits (72), Expect = 8.9
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +2

Query: 71  GVGVTGLRYLG---LKLDGRWNFRAHFEKLGPRADGNGRLFEPAPSKRRGSRSGGAPPLH 241
           GVG TG  +L     ++ GRW        LG R   N R  +PAP+    + +  APP  
Sbjct: 115 GVGATGDHWLAGVDKEIAGRWTAYGGASTLG-RYHSNSRPADPAPAATPPTSNSDAPPPS 173

Query: 242 GGGA 253
           G  A
Sbjct: 174 GNNA 177


>UniRef50_A5P062 Cluster: Putative uncharacterized protein; n=2;
            Proteobacteria|Rep: Putative uncharacterized protein -
            Methylobacterium sp. 4-46
          Length = 829

 Score = 33.1 bits (72), Expect = 8.9
 Identities = 42/138 (30%), Positives = 48/138 (34%), Gaps = 4/138 (2%)
 Frame = +1

Query: 13   PGRAPPDGCP----PRDQEASAIRGRGDRSSVPRPQTGRSVELPRSL*EVGPSC*WQRPA 180
            PG AP    P    PR       RGRG R   P P  GR    PR+         W  P 
Sbjct: 668  PGPAPTGTSPHSPAPRRPARDRGRGRGGRGRRPAPD-GRGRASPRARRTRNGRRSWPGPP 726

Query: 181  L*AGSFQTSGVPIRWRAASTWGWCGRWHYTARPYGATPXTRQNVAALRRPQRAIAVKAIR 360
                + + S  P R         CGR   +       P TR   AA RRP    A    R
Sbjct: 727  PAPRAPRRSAGPARPARRRRSRRCGRSSRSPAGRRRAPGTRPRRAAGRRP----ASGPCR 782

Query: 361  GYRTVSFEAACLLAGAPP 414
              R  +    C  +GAPP
Sbjct: 783  WRRRRAGAPRCRGSGAPP 800


>UniRef50_A4RQ84 Cluster: Putative uncharacterized protein; n=1;
           Magnaporthe grisea|Rep: Putative uncharacterized protein
           - Magnaporthe grisea (Rice blast fungus) (Pyricularia
           grisea)
          Length = 508

 Score = 33.1 bits (72), Expect = 8.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 540 HGPPRLEPPRSNXSFAGAPFPPRA 469
           H PPRL P +   + +G PFPP A
Sbjct: 233 HSPPRLSPGKRGVAISGLPFPPLA 256


>UniRef50_A1CQX4 Cluster: Putative uncharacterized protein; n=1;
           Aspergillus clavatus|Rep: Putative uncharacterized
           protein - Aspergillus clavatus
          Length = 498

 Score = 33.1 bits (72), Expect = 8.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 477 PRAEVXTPPVIGSERLRLQVPGWRPGEQARRLEGDGAVSS 358
           P AE   P V+G+   R++ P  RP E     + DG VS+
Sbjct: 91  PGAENQNPNVVGTAHARVEAPVTRPAETGAESKNDGGVSA 130


>UniRef50_Q03277 Cluster: Retrovirus-related Pol polyprotein from
           type-1 retrotransposable element R1 (Retrovirus-related
           Pol polyprotein from type I retrotransposable element
           R1) [Includes: Reverse transcriptase (EC 2.7.7.49);
           Endonuclease]; n=1; Bradysia coprophila|Rep:
           Retrovirus-related Pol polyprotein from type-1
           retrotransposable element R1 (Retrovirus-related Pol
           polyprotein from type I retrotransposable element R1)
           [Includes: Reverse transcriptase (EC 2.7.7.49);
           Endonuclease] - Sciara coprophila (Fungus gnat)
          Length = 1004

 Score = 33.1 bits (72), Expect = 8.9
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 319 LRRPQRAIAVKAIRGYRTVSFEAACLLAGAPPWDLEA--EALAADYR 453
           L R QR +   ++   RTVS E   +L G  PWDLEA    L +++R
Sbjct: 788 LNRCQRLVLYASLNVCRTVSTERMQVLHGELPWDLEATRRGLLSEFR 834


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,852,947
Number of Sequences: 1657284
Number of extensions: 13724798
Number of successful extensions: 58694
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 51953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58543
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73373641369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -