Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O12
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    28   1.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.3  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   4.4  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    26   7.6  

>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 254 PHHPHVEAARHLIGTPDVWKEPAQRAGRCHQHEGPTSQSERGSSTDRP 111
           PH+P  ++++HL   PD   E  +   R +Q    T +S   S +  P
Sbjct: 247 PHNPSKKSSQHLPLLPDASFELERSVSRSYQSPASTPRSSVSSVSSSP 294


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 534 PPRLEPPRSNXSFAGAPFPPRAEVXTPP 451
           PP   PPRSN +    P PP+     PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 525  LEPPRSNXSFAGAPFPPRAEVXTPP 451
            L PPRS  S +G P P    V  PP
Sbjct: 1020 LLPPRSGSSSSGVPAPNLTPVNVPP 1044


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -1

Query: 263 CHRPHHPHVEAARHLIGTPDVWKEPAQRAGRCHQHEGPTSQSERGSSTDRP 111
           C   H  ++ A RHL+G      E  Q A      +GP    + G+   RP
Sbjct: 102 CSACHSLNLIAWRHLVGVTHTADEAKQMASEVEYEDGP---DDEGNMFKRP 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,815
Number of Sequences: 5004
Number of extensions: 38665
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)