Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O12
         (839 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)                30   2.0  
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_57183| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-08)                 29   6.2  
SB_34376| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_24607| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)                 28   8.2  
SB_50872| Best HMM Match : AraC_E_bind (HMM E-Value=7.5)               28   8.2  
SB_40188| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_30951| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_19415| Best HMM Match : LON (HMM E-Value=4.4)                       28   8.2  
SB_15450| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_12645| Best HMM Match : Laminin_EGF (HMM E-Value=3e-31)             28   8.2  
SB_12578| Best HMM Match : DUF488 (HMM E-Value=9.4)                    28   8.2  
SB_10577| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_54734| Best HMM Match : RVT_1 (HMM E-Value=0.24)                    28   8.2  
SB_41518| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_40322| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)                 28   8.2  
SB_35035| Best HMM Match : Mic1 (HMM E-Value=5.3)                      28   8.2  
SB_32313| Best HMM Match : RnaseH (HMM E-Value=2.5)                    28   8.2  
SB_9947| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2)              28   8.2  

>SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
          Length = 858

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 7   HGPGRAPPDGCPPRDQEASAIRGRGDRSSVPRPQTGRSVELP 132
           HG G A P     R   + A RG  + + VP+  T   V+LP
Sbjct: 44  HGHGHAHPQNSGERKSYSQAARGHQNTTEVPQDFTTARVDLP 85


>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 10  GPGRAPPDGCPPRDQEASAIRGRGDRSSVPRP 105
           GPG  PP G PP++      RG G     PRP
Sbjct: 378 GPG-FPPRGMPPKEDWGPGPRGMGPGMGPPRP 408


>SB_57183| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-08)
          Length = 533

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +2

Query: 50  IRRRPRSGVGVTGLRYLGLKLDGRWNFRAHFEKLGPRADGNGRLFEPAPSKRR-GSRSGG 226
           + RRP +  G  G R+     D R ++R   + + PRA    R+     S+ + GSR G 
Sbjct: 308 MERRPEAAPGYPGSRHSSRHEDERDSYRGSRDPVIPRAGSRDRVPSYHGSREKMGSRQGS 367

Query: 227 APPLHGGGAVD 259
              +   G+ D
Sbjct: 368 RQEMPRYGSRD 378


>SB_34376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 186 SRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCH 290
           +RLL   G P Q    +Y  ++RS+  Y  PVW +
Sbjct: 14  NRLLKKSGVPVQDLVAIYCVLIRSVVEYAGPVWAN 48


>SB_24607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 186 SRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCH 290
           +RLL   G P Q    +Y  ++RS+  Y  PVW +
Sbjct: 14  NRLLKKSGVPVQDLVAIYCVLIRSVVEYAGPVWAN 48


>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
          Length = 1421

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 561 SVRPRLQHGPPRLEPPRSNXSFAGAPFPPRAEVXTPP 451
           S RPR    PP  E PR+N        PP+  + + P
Sbjct: 218 SFRPRTAPLPPAPESPRANPRITSGRAPPKRPLGSTP 254


>SB_50872| Best HMM Match : AraC_E_bind (HMM E-Value=7.5)
          Length = 206

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 189 RLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCH 290
           RLL   G P Q    +Y  ++RS+  Y  PVW +
Sbjct: 71  RLLKKSGVPVQDLVAIYCVLIRSVVEYAGPVWAN 104


>SB_40188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 189 RLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCH 290
           RLL   G P Q    +Y  ++RS+  Y  PVW +
Sbjct: 97  RLLKKSGVPVQDLIAIYCVLIRSVGEYAGPVWAN 130


>SB_30951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 189 RLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCH 290
           RLL   G P Q    +Y  ++RS+  Y  PVW +
Sbjct: 71  RLLKKSGVPVQDLIAIYCVLIRSVVEYAGPVWAN 104


>SB_19415| Best HMM Match : LON (HMM E-Value=4.4)
          Length = 360

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 195 LPNVGGPDQVARRLYMGVVRSMALYGAPVW 284
           +P V   D V  R+Y  ++RS+  Y APVW
Sbjct: 230 IPGVQSNDLV--RIYYALIRSVLEYAAPVW 257


>SB_15450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 189 RLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCH 290
           RLL   G P Q    +Y  ++RS+  Y  PVW +
Sbjct: 71  RLLKKSGVPVQDLVAIYCVLIRSVVEYAGPVWAN 104


>SB_12645| Best HMM Match : Laminin_EGF (HMM E-Value=3e-31)
          Length = 541

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 189 RLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCH 290
           RLL   G P Q    +Y  ++RS+  Y  PVW +
Sbjct: 286 RLLKKSGVPVQDLVAIYCVLIRSVVEYAGPVWAN 319


>SB_12578| Best HMM Match : DUF488 (HMM E-Value=9.4)
          Length = 249

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 189 RLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCH 290
           RLL   G P Q    +Y  ++RS+  Y  PVW +
Sbjct: 114 RLLKKSGVPVQDLVAIYCVLIRSVVEYAGPVWAN 147


>SB_10577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 189 RLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCH 290
           RLL   G P Q    +Y  ++RS+  Y  PVW +
Sbjct: 43  RLLKKSGVPVQDLIAIYCVLIRSVVEYAGPVWAN 76


>SB_54734| Best HMM Match : RVT_1 (HMM E-Value=0.24)
          Length = 299

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 189 RLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCH 290
           RLL   G P Q    +Y  ++RS+  Y  PVW +
Sbjct: 205 RLLKKSGVPVQDLIAIYCVLIRSVVEYAGPVWAN 238


>SB_41518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 189 RLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCH 290
           RLL   G P Q    +Y  ++RS+  Y  PVW +
Sbjct: 116 RLLKKSGVPVQDLIAIYCVLIRSVVEYAGPVWAN 149


>SB_40322| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)
          Length = 710

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 189 RLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCH 290
           RLL   G P Q    +Y  ++RS+  Y  PVW +
Sbjct: 628 RLLKKSGVPVQDLVAIYCVLIRSVVEYAGPVWAN 661


>SB_35035| Best HMM Match : Mic1 (HMM E-Value=5.3)
          Length = 235

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 189 RLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCH 290
           RLL   G P Q    +Y  ++RS+  Y  PVW +
Sbjct: 100 RLLKKSGVPVQDLIAIYCVLIRSVVEYAGPVWAN 133


>SB_32313| Best HMM Match : RnaseH (HMM E-Value=2.5)
          Length = 721

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 189 RLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCH 290
           RLL   G P Q    +Y  ++RS+  Y  PVW +
Sbjct: 594 RLLKKSGVPVQDLVAIYCVLIRSVVEYAGPVWAN 627


>SB_9947| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2)
          Length = 405

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 189 RLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCH 290
           RLL   G P Q    +Y  ++RS+  Y  PVW +
Sbjct: 270 RLLKKSGVPVQDLIAIYCVLIRSVVEYAGPVWAN 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,463,277
Number of Sequences: 59808
Number of extensions: 388608
Number of successful extensions: 1612
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1609
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)