Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O12
         (839 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   5.4  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   5.4  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   5.4  
AC103567-7|AAL35730.2|  337|Caenorhabditis elegans Hypothetical ...    29   5.4  
Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    28   9.5  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    28   9.5  

>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical protein
            F52G2.2a protein.
          Length = 1319

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -3

Query: 561  SVRPRLQHGPPR-LEPPRSNXSFAGAPFPP 475
            S +PR    P   L PP S  SF GAP PP
Sbjct: 1223 SYQPRYNGAPSGPLPPPSSQSSFNGAPAPP 1252


>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical protein
            F52G2.2b protein.
          Length = 1129

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -3

Query: 561  SVRPRLQHGPPR-LEPPRSNXSFAGAPFPP 475
            S +PR    P   L PP S  SF GAP PP
Sbjct: 1033 SYQPRYNGAPSGPLPPPSSQSSFNGAPAPP 1062


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -3

Query: 552 PRLQHGPPRLEPPRSNXSFAGAPFPPRAEVXTPPVIGSERLRLQVPGWRP 403
           P +  GPP   PP       G P PP      PP+ G        PG  P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -3

Query: 552 PRLQHGPPRLEPPRSNXSFAGAPFPPRAEVXTPPVIGSERLRLQVPGWRP 403
           P +  GPP   PP       G P PP      PP+ G        PG  P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -3

Query: 552 PRLQHGPPRLEPPRSNXSFAGAPFPPRAEVXTPPVIGSERLRLQVPGWRP 403
           P +  GPP   PP       G P PP      PP+ G        PG  P
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352


>AC103567-7|AAL35730.2|  337|Caenorhabditis elegans Hypothetical
           protein Y51F10.3 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 200 WKEPAQRAGRCHQHEGPTSQSERGSSTD 117
           W   AQR  R +   GP+S + R SS+D
Sbjct: 226 WPAQAQRGTRVNPRGGPSSSTHRSSSSD 253


>Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical protein
            T07D4.3 protein.
          Length = 1301

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
 Frame = +2

Query: 62   PRSGVGVTGLRYLGLKLDGRWNF-RAHFEKLGP--RADGNGRLFEPAPSKRRGSRSGG 226
            P SG+G       G    G WN  R ++  +G   R  G G  +      R G R GG
Sbjct: 1235 PNSGMGYQNFNNSGYGASGDWNAGRGNYGNVGSGYRGAGGGGGYRGGRGGRGGGRGGG 1292


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 626  HPVREDRTDRLDGTEAGRRVRQA*DHASSTDRRDWSLRART 504
            H   +DR   L     G+RVR+  ++AS     DWS + +T
Sbjct: 1207 HHYEQDREIELQKLGKGKRVRKQINYASENMGTDWSKQNQT 1247


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 626  HPVREDRTDRLDGTEAGRRVRQA*DHASSTDRRDWSLRART 504
            H   +DR   L     G+RVR+  ++AS     DWS + +T
Sbjct: 1207 HHYEQDREIELQKLGKGKRVRKQINYASENMGTDWSKQNQT 1247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,890,126
Number of Sequences: 27780
Number of extensions: 280684
Number of successful extensions: 959
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)