Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O12
         (839 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t...    27   0.26 
At3g22070.1 68416.m02785 proline-rich family protein contains pr...    29   5.1  
At1g53260.1 68414.m06035 hypothetical protein low similarity to ...    29   5.1  
At1g13920.1 68414.m01633 remorin family protein contains Pfam do...    28   8.9  

>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to auxin
           down regulated GB:X69640 GI:296442 from [Glycine max];
           contains Pfam profile PF00234: Protease inhibitor/seed
           storage/LTP family
          Length = 297

 Score = 27.1 bits (57), Expect(2) = 0.26
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +2

Query: 155 PRADGNGRLFEPAPSKRRGSRSGGAPPLHGG 247
           P   G G      P    G + GG PP HGG
Sbjct: 40  PPQHGGGGGGGSKPPPHHGGKGGGKPPPHGG 70



 Score = 24.6 bits (51), Expect(2) = 0.26
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 221 GGAPPLHGGGAVDG 262
           GG PP HGGG   G
Sbjct: 72  GGGPPHHGGGGGGG 85


>At3g22070.1 68416.m02785 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 178

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 552 PRLQHGPPRLEPPRSNXSFAGAPFPPRAEVXTPP 451
           P   + PP   PP  +     AP PP  ++  PP
Sbjct: 113 PSTPNPPPEFSPPPPDLDTTTAPPPPSTDIPIPP 146


>At1g53260.1 68414.m06035 hypothetical protein low similarity to
           SP|Q38732 DAG protein, chloroplast precursor
           {Antirrhinum majus}
          Length = 358

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 534 PPRLEPPRSNXSFAGAPFPP 475
           PP ++PP  N ++ G P PP
Sbjct: 216 PPHIQPPNMNQNYRGPPPPP 235


>At1g13920.1 68414.m01633 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 345

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 534 PPRLEPPRSNXSFAGAPFPPRAEVXTPPVIGSERLRL 424
           PPR++PP    S   AP PP      PP++    LRL
Sbjct: 188 PPRIQPPLRTRSEPRAPPPP-----PPPLLSPSPLRL 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,705,338
Number of Sequences: 28952
Number of extensions: 275772
Number of successful extensions: 894
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)