Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O10
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    32   0.088
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    30   0.35 
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   2.5  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.5  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   4.4  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    26   7.6  
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    26   7.6  

>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 32.3 bits (70), Expect = 0.088
 Identities = 17/89 (19%), Positives = 44/89 (49%)
 Frame = +2

Query: 437 RDNSSPDNVFSTEKLLENTPNFDDRNTESVSPVVEVNEREISVDDGNSCCSDDTVLSVGN 616
           ++NS   +  + E   + TP+ ++  ++  +P + + E+E +  D ++  +++  +S   
Sbjct: 197 KNNSIHSDEVNPEVRPDLTPSNENEESKRSAPEIALKEKESTSQDESNREAEEAPISTNY 256

Query: 617 EAPVSNYEEKASQNTHQELTSFKHIQTHL 703
             P S+ E++  +N        K+  T+L
Sbjct: 257 SFPSSSLEDQPDKNVQSSAVENKNKHTNL 285


>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = +2

Query: 434 ERDNSSPDNVFSTEKLLEN--TPNFDDRNTESVSPVVEVNEREISVDDGNSCCSDDTVLS 607
           +   +S + V    KL+E   +P+ DD+    V    +   R+    D ++  SDD+V S
Sbjct: 68  QEHGASSEEVSQNSKLIEGFTSPSTDDKPNNDVEVDYQELLRQTLEADEDASDSDDSVDS 127

Query: 608 VGNEAPVSNYEEKASQNTHQELTS 679
               + VS    K   N+ + + S
Sbjct: 128 SNKNSEVSIKRRKTESNSQESVDS 151


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = +2

Query: 509  RNTESVSPVVEVNEREISVDDGNSCCSDDTVLSVGNEAPVSNYEEKASQNTHQELTSFKH 688
            R  +   PVV    R +SV DG        V+SV N+        + +     E+ + K 
Sbjct: 1453 RRMDYYGPVVNRTSRVVSVADGGQIAVSAEVVSVLNQLDSETMSSEKTNVNEMEVRALKQ 1512

Query: 689  I 691
            I
Sbjct: 1513 I 1513


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 494 PNFDDRNTESVSPVVEVNEREISVDDGN 577
           PNFD   ++ V  +VE+N+     DD N
Sbjct: 533 PNFDYLVSDQVHKIVEINDEHADCDDVN 560


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 455 DNVFSTEKLLENTPNFD-DRNTESVSPVVEVNEREISVDDGNSCCSDDTVLSVGNEAPVS 631
           D   STE   E++ + D D NT+  +   + N  + S     S  SD+ VLS GN     
Sbjct: 345 DEGTSTEANDESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSDNVVLSDGNSVKKM 404

Query: 632 N 634
           N
Sbjct: 405 N 405


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 503 RNSVYSPRAFPSKRHCQGCCCPAPS*ARCGWRKRM 399
           R+S+ S  +F      +  C P P  A CG+ +++
Sbjct: 509 RSSIESAYSFAHSLGIEASCQPCPENAECGFNRQL 543


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 458 NVFSTEKLLENTPNFDDRNTESVSPV-VEVNEREISVDDG 574
           N    + L+ +  NFD     SVSPV +   + +I ++DG
Sbjct: 70  NTLCEKPLIRHNNNFDPAEASSVSPVEIVPYQTDIILEDG 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,477,342
Number of Sequences: 5004
Number of extensions: 73931
Number of successful extensions: 220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)