BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_O10 (836 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_43688| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29 SB_37289| Best HMM Match : Herpes_teg_N (HMM E-Value=0.07) 32 0.50 SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7) 31 1.2 SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5 SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7 SB_27305| Best HMM Match : MFMR (HMM E-Value=0.53) 29 3.5 SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11) 29 3.5 SB_45260| Best HMM Match : RVT_1 (HMM E-Value=1.2) 29 4.7 SB_15911| Best HMM Match : Sec7 (HMM E-Value=0) 29 6.2 SB_27782| Best HMM Match : Borrelia_orfA (HMM E-Value=0.1) 28 8.2 >SB_43688| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1200 Score = 33.1 bits (72), Expect = 0.29 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = +2 Query: 440 DNSSPDNVFSTEKLLENTPNFDDRNTES-VSPVVEVNEREISVDDGNSCCSDDTVLSVGN 616 D+ +P + E +N N D N+ + V P++ + ++ + G+ CC DDT ++ N Sbjct: 3 DDQTPAKI-GQEIANDNGENIQDTNSSTEVQPLIGLQSKQELPEKGSDCCLDDTAVN-HN 60 Query: 617 EAPVS 631 PV+ Sbjct: 61 MTPVN 65 >SB_37289| Best HMM Match : Herpes_teg_N (HMM E-Value=0.07) Length = 1248 Score = 32.3 bits (70), Expect = 0.50 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Frame = +2 Query: 431 KERDNSSPDNVFSTEKLLENTPNFDDRN-TESVSPVVEVNEREISVDDGNSCCSDDTVLS 607 K+R+N++ D V T L P+ D RN ++++ + + ++ D +DDT L Sbjct: 570 KQRENTNGDYVTQT-ALAAELPDKDIRNMADAMNSISQTTSMKVKPSDTIQIGADDTTLL 628 Query: 608 VGNEAPVSNYEEK 646 +E+ ++ EEK Sbjct: 629 HKDESKMTTVEEK 641 >SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7) Length = 521 Score = 31.1 bits (67), Expect = 1.2 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Frame = +2 Query: 422 VLKKERDNSSPDNVFSTEKLLENTPNFDDRNTESVSPVVEVNEREISVDDGNS-CCSDDT 598 ++KK DNS+ +N S +N+ + D +T S N + D+ NS S D Sbjct: 40 IIKKNPDNSTSENSNSYNSTSDNSTS--DNSTSDNSNSDNSNSDNSNTDNSNSDNSSSDN 97 Query: 599 VLSVGNEAPVSNYEEKASQNTHQE 670 S + + SN + S N++ E Sbjct: 98 SSSDNSNSDNSNTDNSTSNNSNPE 121 Score = 28.3 bits (60), Expect = 8.2 Identities = 18/79 (22%), Positives = 37/79 (46%) Frame = +2 Query: 434 ERDNSSPDNVFSTEKLLENTPNFDDRNTESVSPVVEVNEREISVDDGNSCCSDDTVLSVG 613 ++DNS+P+N + + N D+ N+++ S N S D+ NS S+ + Sbjct: 244 KKDNSNPNNSNTDNSSSADNSNPDNSNSDN-SNTDNSNSDNSSSDNSNSDNSNTDNSTSN 302 Query: 614 NEAPVSNYEEKASQNTHQE 670 N P ++ + ++ N + Sbjct: 303 NSNPENSTSDNSNSNNSNQ 321 >SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 253 Score = 30.7 bits (66), Expect = 1.5 Identities = 23/68 (33%), Positives = 32/68 (47%) Frame = +3 Query: 243 RDGERKWPPYPPICRTLRSKTRAMTIHTLRTRETRQVQSATTMRNRKT*ASVHPLSPSTT 422 R G P T S TRA + T RT T ++++TT SV +PSTT Sbjct: 104 RTGSTTTTSAPSTSTTSNSTTRAPSTSTPRTGSTITLRTSTT--------SVMTTTPSTT 155 Query: 423 CLRRSGTT 446 + R+G+T Sbjct: 156 SISRAGST 163 >SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1488 Score = 29.9 bits (64), Expect = 2.7 Identities = 18/47 (38%), Positives = 22/47 (46%) Frame = +3 Query: 303 TRAMTIHTLRTRETRQVQSATTMRNRKT*ASVHPLSPSTTCLRRSGT 443 TR ++ HTL TR + S T R+ S H LS TC S T Sbjct: 1015 TRTLSSHTLSRPVTRTLSSHTLSRHVTCTLSSHTLSRHVTCTLSSHT 1061 Score = 29.1 bits (62), Expect = 4.7 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 6/56 (10%) Frame = +3 Query: 276 PICRTLRSK------TRAMTIHTLRTRETRQVQSATTMRNRKT*ASVHPLSPSTTC 425 P+ RTL S TR ++ HTL TR + S T R S H LS TC Sbjct: 951 PVTRTLSSHILSRPVTRTLSSHTLSRPVTRTLSSHTLSRPVTRVISSHTLSRHVTC 1006 >SB_27305| Best HMM Match : MFMR (HMM E-Value=0.53) Length = 823 Score = 29.5 bits (63), Expect = 3.5 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -1 Query: 605 TTRCRRYSKNYHRPRLFLFHSL 540 T+ CRR SK + R FLFHS+ Sbjct: 703 TSVCRRVSKEHKNKRCFLFHSV 724 >SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11) Length = 471 Score = 29.5 bits (63), Expect = 3.5 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Frame = +2 Query: 569 DGNSCCSDDT---VLSVGNEAPVSNYEEKASQNTHQELTSFKHIQTHLSAISQLSQ 727 DGN S +T + SV E+PV+ YEE A T + +S K + S ++S+ Sbjct: 230 DGNIAASQETKRPLSSVKFESPVNEYEEMAVDFTRESYSSEKSCLSPSSPEQEMSE 285 >SB_45260| Best HMM Match : RVT_1 (HMM E-Value=1.2) Length = 584 Score = 29.1 bits (62), Expect = 4.7 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +3 Query: 561 AWTMVILAVATTPCCQLETRHPYPTTKRKPARIPTK 668 A+ +L+ + T Q + +HPY T KR+ A + T+ Sbjct: 15 AFAAFLLSFSATSAFQCQDKHPYYTPKRRKAALLTR 50 >SB_15911| Best HMM Match : Sec7 (HMM E-Value=0) Length = 1220 Score = 28.7 bits (61), Expect = 6.2 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Frame = +2 Query: 467 STEKLLENTPNFDDRNTESVSPVVEVNEREISV--DDGNSCCSDDTVLSVGNEAPVSNYE 640 S E E + + E S E E + SV DD NSC ++ T S G+ + Sbjct: 342 SKEGTEEESATGEKEQVEQNSTTKEKTENDSSVHEDDPNSCTAESTQSSAGDVKETEEVQ 401 Query: 641 EKASQNT-HQE 670 +QN+ H E Sbjct: 402 YAQAQNSGHAE 412 >SB_27782| Best HMM Match : Borrelia_orfA (HMM E-Value=0.1) Length = 633 Score = 28.3 bits (60), Expect = 8.2 Identities = 20/73 (27%), Positives = 35/73 (47%) Frame = +3 Query: 255 RKWPPYPPICRTLRSKTRAMTIHTLRTRETRQVQSATTMRNRKT*ASVHPLSPSTTCLRR 434 RK+ + RTLR R +L TR +R+ ++ + +T + S T R+ Sbjct: 379 RKYNTSSLLTRTLRKTMRKHNTSSLLTRTSRKYNKSSLL--TRTSRKYNTSSLLTRTSRK 436 Query: 435 SGTTAALTMSFRR 473 T++ LT +FR+ Sbjct: 437 YNTSSLLTRTFRK 449 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 26,788,840 Number of Sequences: 59808 Number of extensions: 609529 Number of successful extensions: 1934 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1705 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1927 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2359470773 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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