Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_O10
(836 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43688| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_37289| Best HMM Match : Herpes_teg_N (HMM E-Value=0.07) 32 0.50
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7) 31 1.2
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_27305| Best HMM Match : MFMR (HMM E-Value=0.53) 29 3.5
SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11) 29 3.5
SB_45260| Best HMM Match : RVT_1 (HMM E-Value=1.2) 29 4.7
SB_15911| Best HMM Match : Sec7 (HMM E-Value=0) 29 6.2
SB_27782| Best HMM Match : Borrelia_orfA (HMM E-Value=0.1) 28 8.2
>SB_43688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 33.1 bits (72), Expect = 0.29
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 440 DNSSPDNVFSTEKLLENTPNFDDRNTES-VSPVVEVNEREISVDDGNSCCSDDTVLSVGN 616
D+ +P + E +N N D N+ + V P++ + ++ + G+ CC DDT ++ N
Sbjct: 3 DDQTPAKI-GQEIANDNGENIQDTNSSTEVQPLIGLQSKQELPEKGSDCCLDDTAVN-HN 60
Query: 617 EAPVS 631
PV+
Sbjct: 61 MTPVN 65
>SB_37289| Best HMM Match : Herpes_teg_N (HMM E-Value=0.07)
Length = 1248
Score = 32.3 bits (70), Expect = 0.50
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +2
Query: 431 KERDNSSPDNVFSTEKLLENTPNFDDRN-TESVSPVVEVNEREISVDDGNSCCSDDTVLS 607
K+R+N++ D V T L P+ D RN ++++ + + ++ D +DDT L
Sbjct: 570 KQRENTNGDYVTQT-ALAAELPDKDIRNMADAMNSISQTTSMKVKPSDTIQIGADDTTLL 628
Query: 608 VGNEAPVSNYEEK 646
+E+ ++ EEK
Sbjct: 629 HKDESKMTTVEEK 641
>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
Length = 521
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +2
Query: 422 VLKKERDNSSPDNVFSTEKLLENTPNFDDRNTESVSPVVEVNEREISVDDGNS-CCSDDT 598
++KK DNS+ +N S +N+ + D +T S N + D+ NS S D
Sbjct: 40 IIKKNPDNSTSENSNSYNSTSDNSTS--DNSTSDNSNSDNSNSDNSNTDNSNSDNSSSDN 97
Query: 599 VLSVGNEAPVSNYEEKASQNTHQE 670
S + + SN + S N++ E
Sbjct: 98 SSSDNSNSDNSNTDNSTSNNSNPE 121
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/79 (22%), Positives = 37/79 (46%)
Frame = +2
Query: 434 ERDNSSPDNVFSTEKLLENTPNFDDRNTESVSPVVEVNEREISVDDGNSCCSDDTVLSVG 613
++DNS+P+N + + N D+ N+++ S N S D+ NS S+ +
Sbjct: 244 KKDNSNPNNSNTDNSSSADNSNPDNSNSDN-SNTDNSNSDNSSSDNSNSDNSNTDNSTSN 302
Query: 614 NEAPVSNYEEKASQNTHQE 670
N P ++ + ++ N +
Sbjct: 303 NSNPENSTSDNSNSNNSNQ 321
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/68 (33%), Positives = 32/68 (47%)
Frame = +3
Query: 243 RDGERKWPPYPPICRTLRSKTRAMTIHTLRTRETRQVQSATTMRNRKT*ASVHPLSPSTT 422
R G P T S TRA + T RT T ++++TT SV +PSTT
Sbjct: 104 RTGSTTTTSAPSTSTTSNSTTRAPSTSTPRTGSTITLRTSTT--------SVMTTTPSTT 155
Query: 423 CLRRSGTT 446
+ R+G+T
Sbjct: 156 SISRAGST 163
>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1488
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +3
Query: 303 TRAMTIHTLRTRETRQVQSATTMRNRKT*ASVHPLSPSTTCLRRSGT 443
TR ++ HTL TR + S T R+ S H LS TC S T
Sbjct: 1015 TRTLSSHTLSRPVTRTLSSHTLSRHVTCTLSSHTLSRHVTCTLSSHT 1061
Score = 29.1 bits (62), Expect = 4.7
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Frame = +3
Query: 276 PICRTLRSK------TRAMTIHTLRTRETRQVQSATTMRNRKT*ASVHPLSPSTTC 425
P+ RTL S TR ++ HTL TR + S T R S H LS TC
Sbjct: 951 PVTRTLSSHILSRPVTRTLSSHTLSRPVTRTLSSHTLSRPVTRVISSHTLSRHVTC 1006
>SB_27305| Best HMM Match : MFMR (HMM E-Value=0.53)
Length = 823
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 605 TTRCRRYSKNYHRPRLFLFHSL 540
T+ CRR SK + R FLFHS+
Sbjct: 703 TSVCRRVSKEHKNKRCFLFHSV 724
>SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11)
Length = 471
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 569 DGNSCCSDDT---VLSVGNEAPVSNYEEKASQNTHQELTSFKHIQTHLSAISQLSQ 727
DGN S +T + SV E+PV+ YEE A T + +S K + S ++S+
Sbjct: 230 DGNIAASQETKRPLSSVKFESPVNEYEEMAVDFTRESYSSEKSCLSPSSPEQEMSE 285
>SB_45260| Best HMM Match : RVT_1 (HMM E-Value=1.2)
Length = 584
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 561 AWTMVILAVATTPCCQLETRHPYPTTKRKPARIPTK 668
A+ +L+ + T Q + +HPY T KR+ A + T+
Sbjct: 15 AFAAFLLSFSATSAFQCQDKHPYYTPKRRKAALLTR 50
>SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)
Length = 1220
Score = 28.7 bits (61), Expect = 6.2
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = +2
Query: 467 STEKLLENTPNFDDRNTESVSPVVEVNEREISV--DDGNSCCSDDTVLSVGNEAPVSNYE 640
S E E + + E S E E + SV DD NSC ++ T S G+ +
Sbjct: 342 SKEGTEEESATGEKEQVEQNSTTKEKTENDSSVHEDDPNSCTAESTQSSAGDVKETEEVQ 401
Query: 641 EKASQNT-HQE 670
+QN+ H E
Sbjct: 402 YAQAQNSGHAE 412
>SB_27782| Best HMM Match : Borrelia_orfA (HMM E-Value=0.1)
Length = 633
Score = 28.3 bits (60), Expect = 8.2
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +3
Query: 255 RKWPPYPPICRTLRSKTRAMTIHTLRTRETRQVQSATTMRNRKT*ASVHPLSPSTTCLRR 434
RK+ + RTLR R +L TR +R+ ++ + +T + S T R+
Sbjct: 379 RKYNTSSLLTRTLRKTMRKHNTSSLLTRTSRKYNKSSLL--TRTSRKYNTSSLLTRTSRK 436
Query: 435 SGTTAALTMSFRR 473
T++ LT +FR+
Sbjct: 437 YNTSSLLTRTFRK 449
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,788,840
Number of Sequences: 59808
Number of extensions: 609529
Number of successful extensions: 1934
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1927
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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