Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O10
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.86 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   4.6  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   8.1  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 739 HIHVLAQLRYGAQVCLYVFEGGQFLVGILAGFLFVV 632
           +IH+   LRYG  V   +   G  +V +LAG +  V
Sbjct: 124 YIHIKDPLRYGRWVTRRIAVAGIAVVWLLAGLISFV 159


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 676 GQFLVGILAGFLFVVGY 626
           G  +VG LAG L V+GY
Sbjct: 296 GTLIVGALAGLLSVLGY 312


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +2

Query: 512 NTESVSPVVEVNEREISVDDGNSC-CSDD----TVLSVGNEAPVSNYEEKASQ 655
           N+ ++S   E++  E  VD   S  CS D    T  + G+E P++N EEK  Q
Sbjct: 12  NSTTMSVKNEISTVE-PVDPVKSLVCSPDLSVFTSPACGSETPLTNIEEKTYQ 63


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
          protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 3  LES*LRDHAHNIPFKQNNCLIKTIN 77
          LE  LR+H  + PFK   C    +N
Sbjct: 4  LEYHLRNHFGSKPFKCEKCSYSCVN 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,894
Number of Sequences: 438
Number of extensions: 5318
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)