Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_O10
(836 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g59490.1 68416.m06638 expressed protein 35 0.077
At1g34630.1 68414.m04305 expressed protein 34 0.13
At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to... 33 0.18
At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:4... 32 0.54
At1g01790.1 68414.m00098 K+ efflux antiporter, putative (KEA1) i... 31 0.95
At4g00920.1 68417.m00125 COP1-interacting protein-related simila... 29 3.8
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 29 5.1
At4g02880.1 68417.m00388 expressed protein 28 6.7
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 28 6.7
At2g46400.1 68415.m05775 WRKY family transcription factor 28 6.7
At1g74950.1 68414.m08697 expressed protein 28 6.7
At3g24460.1 68416.m03069 TMS membrane family protein / tumour di... 28 8.8
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 28 8.8
>At3g59490.1 68416.m06638 expressed protein
Length = 243
Score = 34.7 bits (76), Expect = 0.077
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 467 STEKLLENTPNFDDRNTESVSPVVEVNEREISVDDGNSCCSDDTVLSV 610
S +KL +T DD NT++ + + E N + S+ SCC DT +++
Sbjct: 137 SIQKLFSSTFPLDDSNTDTTTVLDEANSSQTSLCIDLSCCLQDTKVTI 184
>At1g34630.1 68414.m04305 expressed protein
Length = 481
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 425 ARCGWRKRMNGCLCLPISHRRGTLDLSCLSCSESMDRH 312
+RCG + + G +C P++ + G L L CLS S+ + +
Sbjct: 185 SRCGIKSKRFGTICKPLTWKHGDLFLMCLSSSQILSAY 222
>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
thaliana]; similar to ESTs gb|R30087 and gb|AA394762
Length = 1538
Score = 33.5 bits (73), Expect = 0.18
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +2
Query: 416 HNVLKKERDNSSPD--NVFSTEKLLE-NTPNFDDR-NTESVSPVVEVNEREISVDDGNSC 583
H KK D S D V S ++L +T +DD+ T SVSP V N R + +D N+
Sbjct: 1427 HQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVIANMRVLMTEDSNNA 1486
Query: 584 CSDDTVLSVGNEAPVS 631
S+ +L + P S
Sbjct: 1487 VSNSFLLDDDSSIPFS 1502
>At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:433663
from [Arabidopsis thaliana]
Length = 1529
Score = 31.9 bits (69), Expect = 0.54
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +2
Query: 416 HNVLKKERDNSSPD--NVFSTEKLLE-NTPNFDDR-NTESVSPVVEVNEREISVDDGNSC 583
H KK D S + V S ++L +T +DD+ T SVSP V N R + +D N+
Sbjct: 1418 HQKPKKTLDEISHELCPVLSIQQLYRISTMYWDDKYGTHSVSPDVIANMRVLMTEDSNNA 1477
Query: 584 CSDDTVLSVGNEAPVS 631
S+ +L + P S
Sbjct: 1478 VSNSFLLDDDSSIPFS 1493
>At1g01790.1 68414.m00098 K+ efflux antiporter, putative (KEA1)
identical to GB:AAD01191 GI:4101473 from [ Arabidopsis
thaliana]; Monovalent cation:proton antiporter family 2
(CPA2 family) member, PMID:11500563
Length = 618
Score = 31.1 bits (67), Expect = 0.95
Identities = 28/93 (30%), Positives = 42/93 (45%)
Frame = -2
Query: 679 GGQFLVGILAGFLFVVGYGCLVSN*QHGVVATARITIVHAYFSFIHFNNGTYTLCVSVIE 500
GG ++G LA + + YG + HG A A +V F+ FN G +
Sbjct: 36 GGSPVLGYLAAGILIGPYGLSIIRNVHGTRAIAEFGVV-----FLLFNIGLELSVERLSS 90
Query: 499 IRCILQELFRRKDIVRAAVVPLLLKHVVDGERG 401
++ + L + +V AAVV LL H V G+ G
Sbjct: 91 MKKYVFGLGSAQVLVTAAVVG-LLAHYVAGQAG 122
>At4g00920.1 68417.m00125 COP1-interacting protein-related similar
to COP1-interacting protein 4 (CIP4) [Arabidopsis
thaliana] GI:13160646
Length = 314
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 485 ENTPNFDD--RNTESVSPVVEVNEREISVDDGNSCCSDDTVLSVGNEAPVSN 634
EN + DD R E ++ +V I+ DDG S+ S G + PV+N
Sbjct: 184 ENESHKDDDVRVVEDINQSADVENEGINKDDGVDATSESFPNSTGEKKPVTN 235
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 554 LFHSLQQRDLHSLCFCHRNSVYSPRAFPSKRHCQ 453
L H + + LH+ CF H N V S + +K+ CQ
Sbjct: 126 LLHWMDETYLHT-CFSHTNEVSSVKVIRNKQTCQ 158
>At4g02880.1 68417.m00388 expressed protein
Length = 552
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 470 TEKLLENTPNFDDRNTESVSPVVEVNEREISVDDG 574
TEK LE + + ++ + SP VNER+ +DDG
Sbjct: 508 TEKPLEASYETPEASSNNKSPKASVNERKELLDDG 542
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 440 DNSSPDNVFSTEKLLENTPNFDDRNTESVSPVVEVN 547
D+ SP + ST +++TP DDR E+ V +N
Sbjct: 38 DDQSPKSDSSTPLTIDSTPETDDRINETAQKVQTLN 73
>At2g46400.1 68415.m05775 WRKY family transcription factor
Length = 295
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 419 NVLKK--ERDNSSPDNVFSTEKLLENTPNFDDRNTESVSPVVEVNEREISVDDGN 577
N+LK+ E D NVF K+ E +NTE V V + S+DDG+
Sbjct: 60 NILKRSLEIDGKDSKNVFKKRKVSE-------KNTEKVKVFVATEQENGSIDDGH 107
>At1g74950.1 68414.m08697 expressed protein
Length = 249
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 688 HTNTLERHIAAEPKHECGPTAAITXESINPNP 783
H+ ++ IA+ P C P E I PNP
Sbjct: 165 HSAYSQKEIASSPNPVCSPAKTAAQEPIQPNP 196
>At3g24460.1 68416.m03069 TMS membrane family protein / tumour
differentially expressed (TDE) family protein contains
Pfam domain, PF03348: TMS membrane protein/tumour
differentially expressed protein (TDE)
Length = 409
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = -2
Query: 574 TIVHAYFSFIHFNNGTYTL--CVSVIEIRCILQELFR-RKDIVRAAVVPLLL 428
+I+H Y HF G + L +SVI L E ++ +KD R V +LL
Sbjct: 143 SIIHLYGEIAHFGAGVFLLIQLISVISFIQWLNECYQSQKDAERCRVYVMLL 194
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 27.9 bits (59), Expect = 8.8
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Frame = +2
Query: 416 HNVLKKERDNSSPDNVFSTEKLLENTPNFDDRNTESVSPVVEVNEREISVDD--GNSCCS 589
H KKE + D+V K +E + FD + E E E S D+ N
Sbjct: 4514 HGTDKKEEEEKEQDDVLGKNKGIEMSDEFDGKEYSVSEDEEEDKEDEGSEDEPLDNGIGD 4573
Query: 590 DDTVLSVGNEAPVSNYEEKASQNTHQE 670
+ +E P + EE +N +++
Sbjct: 4574 VGSDAEKADEKPWNKDEEDEEENMNEK 4600
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,308,643
Number of Sequences: 28952
Number of extensions: 398927
Number of successful extensions: 1210
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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