BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_O09 (835 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 297 1e-81 SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 291 8e-80 SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 140 2e-34 SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 119 4e-28 SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.9 SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 7.6 SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 7.6 >SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 449 Score = 297 bits (729), Expect = 1e-81 Identities = 133/215 (61%), Positives = 159/215 (73%) Frame = +1 Query: 109 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 288 MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60 Query: 289 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 468 +VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120 Query: 469 RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVXXX 648 +IR++AD C+GLQGFL+FH LL+ERL+++Y KKSKL+F++YPAPQV Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180 Query: 649 XXXXXXXXXXXXXXXXXXDCAFMVDNEAIYDICRR 753 DC FMVDNE+ YDICRR Sbjct: 181 VVEPYNSVLTTHATLDLADCTFMVDNESCYDICRR 215 Score = 39.5 bits (88), Expect = 6e-04 Identities = 18/25 (72%), Positives = 20/25 (80%) Frame = +2 Query: 758 LDIERPTYTNLNRLIGXIVSSXTXS 832 LDIERP+Y NLNRLI +VSS T S Sbjct: 217 LDIERPSYENLNRLIAQVVSSITAS 241 >SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 455 Score = 291 bits (714), Expect = 8e-80 Identities = 135/220 (61%), Positives = 161/220 (73%), Gaps = 5/220 (2%) Frame = +1 Query: 109 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 273 MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59 Query: 274 TGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 453 TG GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++ Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMI 119 Query: 454 DLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAP 633 D VL+RIR++AD C+GLQGFL+FH LL+ERL+++YGKKS L+F++YPAP Sbjct: 120 DSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAP 179 Query: 634 QVXXXXXXXXXXXXXXXXXXXXXDCAFMVDNEAIYDICRR 753 QV DC FMVDNEA YDICRR Sbjct: 180 QVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRR 219 Score = 41.1 bits (92), Expect = 2e-04 Identities = 19/25 (76%), Positives = 20/25 (80%) Frame = +2 Query: 758 LDIERPTYTNLNRLIGXIVSSXTXS 832 LDIERPTY NLNRLI +VSS T S Sbjct: 221 LDIERPTYENLNRLIAQVVSSITAS 245 >SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces pombe|chr 2|||Manual Length = 448 Score = 140 bits (340), Expect = 2e-34 Identities = 73/212 (34%), Positives = 105/212 (49%) Frame = +1 Query: 109 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 288 MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58 Query: 289 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 468 +VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLD 118 Query: 469 RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVXXX 648 +R+ A+ C LQGF + H LL+ ++ +Y + F++ PAP+ Sbjct: 119 VVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDT 178 Query: 649 XXXXXXXXXXXXXXXXXXDCAFMVDNEAIYDI 744 D F +DNEA+ I Sbjct: 179 VVEPYNATLSMHQLVENSDETFCIDNEALSSI 210 >SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr 2|||Manual Length = 446 Score = 119 bits (287), Expect = 4e-28 Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 3/228 (1%) Frame = +1 Query: 112 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 291 RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ ++ Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60 Query: 292 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVL 465 +PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+ + I + ++ Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119 Query: 466 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ-VX 642 D I + AD L+GF + H L+ERL+ Y KK ++++P Q V Sbjct: 120 DMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVS 179 Query: 643 XXXXXXXXXXXXXXXXXXXXDCAFMVDNEAIYDICRRXSRH*APNLHQ 786 D ++DN A+ I P HQ Sbjct: 180 DVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQ 227 >SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 534 Score = 27.9 bits (59), Expect = 1.9 Identities = 41/186 (22%), Positives = 70/186 (37%) Frame = +2 Query: 188 STASSLMARCPQTRPSGVETILSTLSSARPELASTYPVXXXXXXXXXXXXXXXXAHTDSC 367 ST SSL + ++PS T ST SSA P S+ + + S Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS----SYLSSSSVVSSSSSPSSSSSS 228 Query: 368 FIQNNLLLVRKMRXXXXXXXXXXLERKS*IWFWTESASSLTSVPVCKDS*SSTPSVEVPA 547 + ++ L + S T S+SS +S + S SS+ + Sbjct: 229 TLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSS 288 Query: 548 LGSLPY*WSVSPLTTARSLNWSSPSTPRLRFHCRRRALQLYPHHPHNPXSTLTVLSWSTM 727 S S SP +T+ +++ SS S+ ++ +P S+ + +S S+ Sbjct: 289 TISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSS 348 Query: 728 KPSMTS 745 PS +S Sbjct: 349 SPSSSS 354 >SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1275 Score = 25.8 bits (54), Expect = 7.6 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +3 Query: 207 WPDAHRQDHRGWRRFFQHFLQR 272 W A R D R R FQHFLQR Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611 >SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual Length = 3971 Score = 25.8 bits (54), Expect = 7.6 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%) Frame = +2 Query: 467 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTPRLRF 640 T S + TS P+ S SSTP L S +P+T++ +LN S+P T Sbjct: 625 TSSTALNTSTPITSSSVLNSSTPITSSSVLNSS------TPITSSTALNTSTPITSSSVL 678 Query: 641 HCRRRALQLYPHHPHNPXSTLTVLSWSTMKPSMTS 745 + + P ++ +VL+ ST S T+ Sbjct: 679 NSSTPITSSTALNTSTPITSSSVLNSSTAITSSTA 713 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,413,448 Number of Sequences: 5004 Number of extensions: 71292 Number of successful extensions: 228 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 173 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 212 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 410448950 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -