Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_O08
(823 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 66 6e-12
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 29 0.80
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 28 1.4
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 27 2.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.4
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 27 3.2
SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M... 27 3.2
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 3.2
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 26 7.4
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch... 25 9.8
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 25 9.8
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 25 9.8
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 66.1 bits (154), Expect = 6e-12
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Frame = +2
Query: 263 LEPIMFKYLELCVDLRKSHVAKEGLFQYRNMFQSVNVGSLEQVIRGYLRYGRGTHRNSQG 442
LEPIM +++ELCV LRK +AKEGL+ Y+N Q+ +V ++E V++ ++ + +Q
Sbjct: 48 LEPIMMRFIELCVHLRKGKIAKEGLYTYKNAVQNTSVTAIENVVKHFIELANKRVQEAQE 107
Query: 443 FIDAGRHRH---**SG*PCNRRAYS*VQCQVKMPRTDLTEQYSHHGLKFLWESYCQCLEL 613
D + + S V + RTD LKFLW++Y L++
Sbjct: 108 KADKISVEYVDDLEATETPESIMMSLVSGDLSKSRTD--RALVTPWLKFLWDAYRTVLDI 165
Query: 614 LRTNAHVEXL 643
LR NA +E +
Sbjct: 166 LRNNARLEVM 175
Score = 58.4 bits (135), Expect = 1e-09
Identities = 31/80 (38%), Positives = 46/80 (57%)
Frame = +1
Query: 484 TLQPESILLSAVSGEDAQDRSDRTILTPWVEIPLGILLPMPGAPSYECSCGXPCIMILLA 663
T PESI++S VSG+ ++ R+DR ++TPW++ + +I +
Sbjct: 123 TETPESIMMSLVSGDLSKSRTDRALVTPWLKFLWDAYRTVLDILRNNARLEVMYQLIANS 182
Query: 664 WPFQFCLKYSRKTEFRKLCD 723
FQFCLKY RKTEFR+LC+
Sbjct: 183 -AFQFCLKYQRKTEFRRLCE 201
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 29.1 bits (62), Expect = 0.80
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -3
Query: 551 LSDRSWASSPDTALRSMLSGCKVIQIISVYD 459
LSD W +SP L ++ GCK + ISVYD
Sbjct: 579 LSDILWINSPVDKLEHLIVGCK--ERISVYD 607
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/61 (21%), Positives = 30/61 (49%)
Frame = -3
Query: 194 LAGLSKSMNSLARLRAFSGL*PYRAIFFISLSTSLTQFRRFYVGLGEKTEFLQHRPHTRQ 15
L GLS ++ + + +F + P + +F+ + ++ ++G+ EKT F + +
Sbjct: 687 LVGLSATLPNYTDVASFLHVDPKKGLFYFDSTYRPCPLKQEFIGITEKTPFKRMQTTNEA 746
Query: 14 C 12
C
Sbjct: 747 C 747
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 156 FKGIFRSL-TVSRHFLYITFYFINTISSILCRFRRENRIPPAP 31
F I+R L V+ FL + YFI I IL ++++PP P
Sbjct: 584 FSNIYRILGKVTYKFLKLVQYFIINIFDILSPAGPDSQLPPEP 626
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -1
Query: 514 HSGVCSPVARLSRSSV-SMTACVDKALAVSVRSSAITEIASYNL 386
+S S + +S+ SV S T ++ S RSS ++E++SY+L
Sbjct: 3593 NSTTVSTASGISQGSVLSSTRAIESESTASHRSSVLSELSSYDL 3636
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 27.1 bits (57), Expect = 3.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 582 FGNPTANAWSSFVRMLMWKXL 644
FG P A W+ F++ L W L
Sbjct: 170 FGTPDAEGWNEFLKCLEWAVL 190
>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +1
Query: 427 QKQPGLYRRRPS*TLMIWITLQPESILLSAVSGEDAQDRSDRTILTPWVEIPLG 588
QK PGL L +++ + + LL ++ QD ++T L+P+ ++PLG
Sbjct: 52 QKAPGLL------ILKNYVSSELQMQLLKSIMFTQIQDPENKTNLSPFYQLPLG 99
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 641 GFPHEHSYEGAPGIGSRIPKGISTHGVSIVLSD 543
G PH+ +G+ +G +I G G+SIVL +
Sbjct: 535 GSPHDFEIQGSQIVGFQIRCGAWVDGISIVLEN 567
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -3
Query: 617 EGAPGIGSRIPKGISTHGVSIVLSDRSWASSPDTALRSML 498
E +P +P+G S H V++ W+ PD S+L
Sbjct: 91 EISPYYTKALPQGFSFHPVTLTSDHPLWSILPDEVRNSLL 130
>SPCC1259.06 |||transcription factor TFIID complex subunit 8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 51 NRIPPAPASHATM*NPV 1
N +PP PASH M PV
Sbjct: 132 NHLPPFPASHTYMATPV 148
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Frame = +2
Query: 266 EPIMFKYLELCVD------LRKSHVAKEGLFQYRNMFQS 364
EP KY+E+CVD K+ + K L Y+ F++
Sbjct: 189 EPTDMKYVEVCVDSITSLSFDKTDMTKPNLSSYKTFFET 227
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +2
Query: 155 NGPMSSWIWTNQQGP*TPYRKFSXNKKWAY 244
+ P + +W+ +GP PY+KFS + +
Sbjct: 619 SNPTTWGLWSMIRGPLAPYQKFSDQNDYIW 648
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,541,750
Number of Sequences: 5004
Number of extensions: 76886
Number of successful extensions: 220
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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