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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O08
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    66   6e-12
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    29   0.80 
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    28   1.4  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    27   2.4  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.4  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    27   3.2  
SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M...    27   3.2  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   3.2  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    26   7.4  
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch...    25   9.8  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   9.8  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   9.8  

>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 66.1 bits (154), Expect = 6e-12
 Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
 Frame = +2

Query: 263 LEPIMFKYLELCVDLRKSHVAKEGLFQYRNMFQSVNVGSLEQVIRGYLRYGRGTHRNSQG 442
           LEPIM +++ELCV LRK  +AKEGL+ Y+N  Q+ +V ++E V++ ++       + +Q 
Sbjct: 48  LEPIMMRFIELCVHLRKGKIAKEGLYTYKNAVQNTSVTAIENVVKHFIELANKRVQEAQE 107

Query: 443 FIDAGRHRH---**SG*PCNRRAYS*VQCQVKMPRTDLTEQYSHHGLKFLWESYCQCLEL 613
             D     +     +         S V   +   RTD         LKFLW++Y   L++
Sbjct: 108 KADKISVEYVDDLEATETPESIMMSLVSGDLSKSRTD--RALVTPWLKFLWDAYRTVLDI 165

Query: 614 LRTNAHVEXL 643
           LR NA +E +
Sbjct: 166 LRNNARLEVM 175



 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 31/80 (38%), Positives = 46/80 (57%)
 Frame = +1

Query: 484 TLQPESILLSAVSGEDAQDRSDRTILTPWVEIPLGILLPMPGAPSYECSCGXPCIMILLA 663
           T  PESI++S VSG+ ++ R+DR ++TPW++        +               +I  +
Sbjct: 123 TETPESIMMSLVSGDLSKSRTDRALVTPWLKFLWDAYRTVLDILRNNARLEVMYQLIANS 182

Query: 664 WPFQFCLKYSRKTEFRKLCD 723
             FQFCLKY RKTEFR+LC+
Sbjct: 183 -AFQFCLKYQRKTEFRRLCE 201


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -3

Query: 551 LSDRSWASSPDTALRSMLSGCKVIQIISVYD 459
           LSD  W +SP   L  ++ GCK  + ISVYD
Sbjct: 579 LSDILWINSPVDKLEHLIVGCK--ERISVYD 607


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/61 (21%), Positives = 30/61 (49%)
 Frame = -3

Query: 194 LAGLSKSMNSLARLRAFSGL*PYRAIFFISLSTSLTQFRRFYVGLGEKTEFLQHRPHTRQ 15
           L GLS ++ +   + +F  + P + +F+   +      ++ ++G+ EKT F + +     
Sbjct: 687 LVGLSATLPNYTDVASFLHVDPKKGLFYFDSTYRPCPLKQEFIGITEKTPFKRMQTTNEA 746

Query: 14  C 12
           C
Sbjct: 747 C 747


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 156 FKGIFRSL-TVSRHFLYITFYFINTISSILCRFRRENRIPPAP 31
           F  I+R L  V+  FL +  YFI  I  IL     ++++PP P
Sbjct: 584 FSNIYRILGKVTYKFLKLVQYFIINIFDILSPAGPDSQLPPEP 626


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -1

Query: 514  HSGVCSPVARLSRSSV-SMTACVDKALAVSVRSSAITEIASYNL 386
            +S   S  + +S+ SV S T  ++     S RSS ++E++SY+L
Sbjct: 3593 NSTTVSTASGISQGSVLSSTRAIESESTASHRSSVLSELSSYDL 3636


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 582 FGNPTANAWSSFVRMLMWKXL 644
           FG P A  W+ F++ L W  L
Sbjct: 170 FGTPDAEGWNEFLKCLEWAVL 190


>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 427 QKQPGLYRRRPS*TLMIWITLQPESILLSAVSGEDAQDRSDRTILTPWVEIPLG 588
           QK PGL        L  +++ + +  LL ++     QD  ++T L+P+ ++PLG
Sbjct: 52  QKAPGLL------ILKNYVSSELQMQLLKSIMFTQIQDPENKTNLSPFYQLPLG 99


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 641 GFPHEHSYEGAPGIGSRIPKGISTHGVSIVLSD 543
           G PH+   +G+  +G +I  G    G+SIVL +
Sbjct: 535 GSPHDFEIQGSQIVGFQIRCGAWVDGISIVLEN 567


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 617 EGAPGIGSRIPKGISTHGVSIVLSDRSWASSPDTALRSML 498
           E +P     +P+G S H V++      W+  PD    S+L
Sbjct: 91  EISPYYTKALPQGFSFHPVTLTSDHPLWSILPDEVRNSLL 130


>SPCC1259.06 |||transcription factor TFIID complex subunit 8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 51  NRIPPAPASHATM*NPV 1
           N +PP PASH  M  PV
Sbjct: 132 NHLPPFPASHTYMATPV 148


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
 Frame = +2

Query: 266 EPIMFKYLELCVD------LRKSHVAKEGLFQYRNMFQS 364
           EP   KY+E+CVD        K+ + K  L  Y+  F++
Sbjct: 189 EPTDMKYVEVCVDSITSLSFDKTDMTKPNLSSYKTFFET 227


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 155 NGPMSSWIWTNQQGP*TPYRKFSXNKKWAY 244
           + P +  +W+  +GP  PY+KFS    + +
Sbjct: 619 SNPTTWGLWSMIRGPLAPYQKFSDQNDYIW 648


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,541,750
Number of Sequences: 5004
Number of extensions: 76886
Number of successful extensions: 220
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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