BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_O08 (823 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 66 6e-12 SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 29 0.80 SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 28 1.4 SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 27 2.4 SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.4 SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 27 3.2 SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M... 27 3.2 SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 3.2 SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 26 7.4 SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch... 25 9.8 SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 25 9.8 SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 25 9.8 >SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizosaccharomyces pombe|chr 2|||Manual Length = 932 Score = 66.1 bits (154), Expect = 6e-12 Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 3/130 (2%) Frame = +2 Query: 263 LEPIMFKYLELCVDLRKSHVAKEGLFQYRNMFQSVNVGSLEQVIRGYLRYGRGTHRNSQG 442 LEPIM +++ELCV LRK +AKEGL+ Y+N Q+ +V ++E V++ ++ + +Q Sbjct: 48 LEPIMMRFIELCVHLRKGKIAKEGLYTYKNAVQNTSVTAIENVVKHFIELANKRVQEAQE 107 Query: 443 FIDAGRHRH---**SG*PCNRRAYS*VQCQVKMPRTDLTEQYSHHGLKFLWESYCQCLEL 613 D + + S V + RTD LKFLW++Y L++ Sbjct: 108 KADKISVEYVDDLEATETPESIMMSLVSGDLSKSRTD--RALVTPWLKFLWDAYRTVLDI 165 Query: 614 LRTNAHVEXL 643 LR NA +E + Sbjct: 166 LRNNARLEVM 175 Score = 58.4 bits (135), Expect = 1e-09 Identities = 31/80 (38%), Positives = 46/80 (57%) Frame = +1 Query: 484 TLQPESILLSAVSGEDAQDRSDRTILTPWVEIPLGILLPMPGAPSYECSCGXPCIMILLA 663 T PESI++S VSG+ ++ R+DR ++TPW++ + +I + Sbjct: 123 TETPESIMMSLVSGDLSKSRTDRALVTPWLKFLWDAYRTVLDILRNNARLEVMYQLIANS 182 Query: 664 WPFQFCLKYSRKTEFRKLCD 723 FQFCLKY RKTEFR+LC+ Sbjct: 183 -AFQFCLKYQRKTEFRRLCE 201 >SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 612 Score = 29.1 bits (62), Expect = 0.80 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = -3 Query: 551 LSDRSWASSPDTALRSMLSGCKVIQIISVYD 459 LSD W +SP L ++ GCK + ISVYD Sbjct: 579 LSDILWINSPVDKLEHLIVGCK--ERISVYD 607 >SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 2176 Score = 28.3 bits (60), Expect = 1.4 Identities = 13/61 (21%), Positives = 30/61 (49%) Frame = -3 Query: 194 LAGLSKSMNSLARLRAFSGL*PYRAIFFISLSTSLTQFRRFYVGLGEKTEFLQHRPHTRQ 15 L GLS ++ + + +F + P + +F+ + ++ ++G+ EKT F + + Sbjct: 687 LVGLSATLPNYTDVASFLHVDPKKGLFYFDSTYRPCPLKQEFIGITEKTPFKRMQTTNEA 746 Query: 14 C 12 C Sbjct: 747 C 747 >SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 713 Score = 27.5 bits (58), Expect = 2.4 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = -2 Query: 156 FKGIFRSL-TVSRHFLYITFYFINTISSILCRFRRENRIPPAP 31 F I+R L V+ FL + YFI I IL ++++PP P Sbjct: 584 FSNIYRILGKVTYKFLKLVQYFIINIFDILSPAGPDSQLPPEP 626 >SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual Length = 3971 Score = 27.5 bits (58), Expect = 2.4 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = -1 Query: 514 HSGVCSPVARLSRSSV-SMTACVDKALAVSVRSSAITEIASYNL 386 +S S + +S+ SV S T ++ S RSS ++E++SY+L Sbjct: 3593 NSTTVSTASGISQGSVLSSTRAIESESTASHRSSVLSELSSYDL 3636 >SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces pombe|chr 3|||Manual Length = 1150 Score = 27.1 bits (57), Expect = 3.2 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = +3 Query: 582 FGNPTANAWSSFVRMLMWKXL 644 FG P A W+ F++ L W L Sbjct: 170 FGTPDAEGWNEFLKCLEWAVL 190 >SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 273 Score = 27.1 bits (57), Expect = 3.2 Identities = 16/54 (29%), Positives = 29/54 (53%) Frame = +1 Query: 427 QKQPGLYRRRPS*TLMIWITLQPESILLSAVSGEDAQDRSDRTILTPWVEIPLG 588 QK PGL L +++ + + LL ++ QD ++T L+P+ ++PLG Sbjct: 52 QKAPGLL------ILKNYVSSELQMQLLKSIMFTQIQDPENKTNLSPFYQLPLG 99 >SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|||Manual Length = 612 Score = 27.1 bits (57), Expect = 3.2 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -3 Query: 641 GFPHEHSYEGAPGIGSRIPKGISTHGVSIVLSD 543 G PH+ +G+ +G +I G G+SIVL + Sbjct: 535 GSPHDFEIQGSQIVGFQIRCGAWVDGISIVLEN 567 >SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces pombe|chr 3|||Manual Length = 381 Score = 25.8 bits (54), Expect = 7.4 Identities = 12/40 (30%), Positives = 19/40 (47%) Frame = -3 Query: 617 EGAPGIGSRIPKGISTHGVSIVLSDRSWASSPDTALRSML 498 E +P +P+G S H V++ W+ PD S+L Sbjct: 91 EISPYYTKALPQGFSFHPVTLTSDHPLWSILPDEVRNSLL 130 >SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Schizosaccharomyces pombe|chr 3|||Manual Length = 222 Score = 25.4 bits (53), Expect = 9.8 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -2 Query: 51 NRIPPAPASHATM*NPV 1 N +PP PASH M PV Sbjct: 132 NHLPPFPASHTYMATPV 148 >SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|||Manual Length = 767 Score = 25.4 bits (53), Expect = 9.8 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 6/39 (15%) Frame = +2 Query: 266 EPIMFKYLELCVD------LRKSHVAKEGLFQYRNMFQS 364 EP KY+E+CVD K+ + K L Y+ F++ Sbjct: 189 EPTDMKYVEVCVDSITSLSFDKTDMTKPNLSSYKTFFET 227 >SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosaccharomyces pombe|chr 2|||Manual Length = 2352 Score = 25.4 bits (53), Expect = 9.8 Identities = 9/30 (30%), Positives = 17/30 (56%) Frame = +2 Query: 155 NGPMSSWIWTNQQGP*TPYRKFSXNKKWAY 244 + P + +W+ +GP PY+KFS + + Sbjct: 619 SNPTTWGLWSMIRGPLAPYQKFSDQNDYIW 648 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,541,750 Number of Sequences: 5004 Number of extensions: 76886 Number of successful extensions: 220 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 207 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 220 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 402440190 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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