Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O08
         (823 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)           82   6e-16
SB_1875| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_27193| Best HMM Match : Metallophos (HMM E-Value=7.6e-11)           30   2.6  
SB_38431| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            28   8.0  

>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score = 81.8 bits (193), Expect = 6e-16
 Identities = 35/54 (64%), Positives = 44/54 (81%)
 Frame = +2

Query: 248 WSESVLEPIMFKYLELCVDLRKSHVAKEGLFQYRNMFQSVNVGSLEQVIRGYLR 409
           W   + EPI+FKYLELCVDLR+SHVAKEGL+QY+ + Q VN+ SLE VIR +L+
Sbjct: 27  WQNKIHEPILFKYLELCVDLRRSHVAKEGLYQYKLICQQVNIASLEDVIRYFLK 80



 Score = 68.1 bits (159), Expect = 8e-12
 Identities = 46/112 (41%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
 Frame = +1

Query: 493 PESILLSAVSGEDAQDRSDRTILTPWV----EIPLGILLPMPGAPSYECSCGXPCIMILL 660
           PES+LLS VSGED QDR+DR  LTPWV    E    +L  +      E            
Sbjct: 116 PESLLLSFVSGEDTQDRTDRVKLTPWVKFLWEAYRNVLELLRNNVRVE-----KLYHETA 170

Query: 661 AWPFQFCLKYSRKTEFRKLCDN*GNILXIFANLQCNLVPLAXXXQKPNSLNL 816
              F+FCLKY+R+TEFRKLCDN  N L +   L+    P +     P+S+ +
Sbjct: 171 QQAFKFCLKYTRRTEFRKLCDNLRNHLNV--TLKHQGQPNSVNLNNPDSIQM 220



 Score = 34.7 bits (76), Expect = 0.092
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +2

Query: 572 LKFLWESYCQCLELLRTNAHVEXL 643
           +KFLWE+Y   LELLR N  VE L
Sbjct: 142 VKFLWEAYRNVLELLRNNVRVEKL 165



 Score = 34.3 bits (75), Expect = 0.12
 Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 4/163 (2%)
 Frame = +3

Query: 333 VCSSTETCSNQLTLGLWSRL*EAISVMAEERTETARALSTQAVIDTDDLDNLATGEHTPE 512
           +C      S +  +  + +L E+ +V A+E +    +      +D +DLD +     TPE
Sbjct: 62  ICQQVNIASLEDVIRYFLKLAESRAVEAQEDSRKEASAELDEDVDIEDLDQI----QTPE 117

Query: 513 CSVR*RCPGPI*QNNTHTMG*NSFGNPTANAWSSFVRMLM----WKXLYHDIARMAXPIL 680
             +     G   Q+ T  +    +      A+ + + +L      + LYH+ A+ A    
Sbjct: 118 SLLLSFVSGEDTQDRTDRVKLTPWVKFLWEAYRNVLELLRNNVRVEKLYHETAQQAFKFC 177

Query: 681 FKVLAKNRIQKAL**LRKHLXXICXPTVQPGTXSXXXPETQQL 809
            K   +   +K    LR HL        QP + +   P++ Q+
Sbjct: 178 LKYTRRTEFRKLCDNLRNHLNVTLKHQGQPNSVNLNNPDSIQM 220


>SB_1875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -1

Query: 535 GHLHLTLHSGVCSPVARLSRSSVSMTACVDKALAVSVRSSAITEIAS 395
           G  H+ +H   CS   +++  SV  T  V+ A A+ +  +AI EIA+
Sbjct: 293 GVCHIPMHDPYCSVTKQVTVESVIATFKVNVANAIKILIAAIPEIAA 339


>SB_27193| Best HMM Match : Metallophos (HMM E-Value=7.6e-11)
          Length = 341

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/67 (23%), Positives = 36/67 (53%)
 Frame = -1

Query: 619 TKELQALAVGFPKEFQPMV*VLFCQIGPGHLHLTLHSGVCSPVARLSRSSVSMTACVDKA 440
           T  L  +  G P++ +P +  LF + G   + ++ ++  C+PV  ++ S+VSM+  ++  
Sbjct: 200 TNHLSIVRTGIPEKNKPGLEDLFYEYGSA-VSMSPYTNPCAPVHIITGSTVSMSPYINPC 258

Query: 439 LAVSVRS 419
             V + +
Sbjct: 259 APVHINT 265


>SB_38431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = -1

Query: 547 QIGPGHLHLTLHSGVCSPVARLSRSSVSMTACVDKALAVSVRSSAITEIASYNL 386
           QIG  +L L  H G  +P+A  S  +++ T   +  L  SV  + +++  S ++
Sbjct: 749 QIGNANLSLPAHQGFVNPMAGQSSGTITPTDGTNNGLKPSVPPTTLSQTVSTSI 802


>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +2

Query: 239 AYNWSESVLEPIMF---KYLELCVDLRKSHVAKEGLFQYRNMFQSVNVGSLEQVIRGYLR 409
           A +W E VL   M    K+L+ C       VAK  LFQ  ++++  N+  +  +++  +R
Sbjct: 688 AVDWIEKVLGEEMVTIAKFLDFCGTFG---VAKSDLFQTVDLYEKQNIQQVNDMMKRLIR 744

Query: 410 YGR 418
           + R
Sbjct: 745 HHR 747


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,072,877
Number of Sequences: 59808
Number of extensions: 593906
Number of successful extensions: 1383
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)