Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O08
         (823 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defe...    81   1e-15
AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine re...    31   1.3  
U41749-1|AAB52488.2|  248|Caenorhabditis elegans Dehydrogenases,...    28   9.3  

>L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying
           defective protein 45 protein.
          Length = 1076

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 53/134 (39%), Positives = 69/134 (51%), Gaps = 2/134 (1%)
 Frame = +2

Query: 248 WSESVLEPIMFKYLELCVDLRKSHVAKEGLFQYRNMFQSVNVGSLEQVIRGYLRYG--RG 421
           W+ +V E IM K++ELCVDL+K H+AK+ LFQY+ + Q +NV SLE V+  +L+    R 
Sbjct: 44  WT-TVHEQIMIKHMELCVDLKKQHLAKDALFQYKALTQQINVKSLETVVVHFLKLAEQRT 102

Query: 422 THRNSQGFIDAGRHRH**SG*PCNRRAYS*VQCQVKMPRTDLTEQYSHHGLKFLWESYCQ 601
                Q             G    R   + V       R D T       L+FLW+SY  
Sbjct: 103 EDAQKQSIEKVEEIGDLDQGDVPERLLLAVVSGAAAQDRMDRT--VLAPWLRFLWDSYRN 160

Query: 602 CLELLRTNAHVEXL 643
           CLELLR NA VE L
Sbjct: 161 CLELLRNNAQVEQL 174



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 31/77 (40%), Positives = 38/77 (49%)
 Frame = +1

Query: 493 PESILLSAVSGEDAQDRSDRTILTPWVEIPLGILLPMPGAPSYECSCGXPCIMILLAWPF 672
           PE +LL+ VSG  AQDR DRT+L PW+                           +    F
Sbjct: 125 PERLLLAVVSGAAAQDRMDRTVLAPWLRFLWDSYRNCLELLRNNAQV-EQLYHTISRHSF 183

Query: 673 QFCLKYSRKTEFRKLCD 723
            FCL+Y R+TEFRKLCD
Sbjct: 184 TFCLRYQRRTEFRKLCD 200



 Score = 35.1 bits (77), Expect = 0.061
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +1

Query: 127 YGQRPENALKRANEFMDLDKPARALDTLQE 216
           Y Q+PE ALKRA E + + K + ALDTL +
Sbjct: 5   YFQKPEAALKRAEELIQVGKESDALDTLHD 34


>AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine
           receptor, class x protein104 protein.
          Length = 279

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 270 QSCSNTWNFALIYVNLMLQRKVCSSTETCSNQLTLGL 380
           QSC   W   L+ +N +L    C S   C+N +T+GL
Sbjct: 222 QSCFQDWIAVLVILNNILASMYCRS-HVCTNLITMGL 257


>U41749-1|AAB52488.2|  248|Caenorhabditis elegans Dehydrogenases,
           short chain protein25 protein.
          Length = 248

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 614 GAPGIGSRIPKGISTHGVSIVLSDRSWASSPDTA 513
           GA GIG  I + ++ HG  +V++D    ++  TA
Sbjct: 15  GASGIGKAISQTLAKHGARVVVADLDSGNAAATA 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,913,918
Number of Sequences: 27780
Number of extensions: 448149
Number of successful extensions: 951
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)