Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O08
         (823 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11420.1 68417.m01840 eukaryotic translation initiation facto...    77   1e-14
At1g68460.1 68414.m07821 adenylate isopentenyltransferase 1 / cy...    31   1.2  
At3g46590.1 68416.m05057 telomere repeat-binding protein, putati...    29   4.9  
At5g55893.1 68418.m06968 hypothetical protein                          28   6.5  
At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to c...    28   6.5  
At5g48520.1 68418.m05999 expressed protein similar to unknown pr...    28   8.6  

>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
           subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
           eukaryotic translation initiation factor 3 subunit 10
           (eIF-3 theta) (Eukaryotic translation initiation factor
           3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
           SWISS-PROT:Q9LD55
          Length = 987

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 51/138 (36%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
 Frame = +2

Query: 242 YNWSESVLEPIMFKYLELCVDLRKSHVAKEGLFQYRNMFQSVNVGSLEQVIRGYLRYGRG 421
           Y   +  LE IMFKYL+LCVDL++   AK+GL QYR + Q VNV SLE+VI+ +L     
Sbjct: 39  YRAWQKPLEKIMFKYLDLCVDLKRGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFLHLATD 98

Query: 422 THRNSQGFIDAGRHRH**SG*PCNRR----AYS*VQCQVKMPRTDLTEQYSHHGLKFLWE 589
               ++   DA            +R+      S V  +    R+D   +      KFLWE
Sbjct: 99  KAEQARSQADALEEALDVDDLEADRKPEDLQLSIVSGEKGKDRSD--RELVTPWFKFLWE 156

Query: 590 SYCQCLELLRTNAHVEXL 643
           +Y   LE+LR N+ +E L
Sbjct: 157 TYRTVLEILRNNSKLEAL 174



 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +1

Query: 490 QPESILLSAVSGEDAQDRSDRTILTPWVEIPLGILLPMPGAPSYECSCGXPCIMILLAW- 666
           +PE + LS VSGE  +DRSDR ++TPW +        +        +     +  + A  
Sbjct: 124 KPEDLQLSIVSGEKGKDRSDRELVTPWFKFLWETYRTV--LEILRNNSKLEALYAMTAHK 181

Query: 667 PFQFCLKYSRKTEFRKLCD 723
            FQFC +Y R TEFR+LC+
Sbjct: 182 AFQFCKQYKRTTEFRRLCE 200



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 118 MARYGQRPENALKRANEFMDLDKPARALDTLQEV 219
           MA +  +PENALKRA+E +++ +   AL  L ++
Sbjct: 1   MANFA-KPENALKRADELINVGQKQDALQALHDL 33


>At1g68460.1 68414.m07821 adenylate isopentenyltransferase 1 /
           cytokinin synthase (IPT1) identical to adenylate
           isopentenyltransferase (IPT1) [Arabidopsis thaliana]
           GI:14279054
          Length = 357

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +2

Query: 215 KFSXNKKWAYNWSESVLEP 271
           K S  KKW  NW E VLEP
Sbjct: 327 KSSSEKKWRENWEEQVLEP 345


>At3g46590.1 68416.m05057 telomere repeat-binding protein, putative
           similar to telomere repeat-binding protein TRP1
           [Arabidopsis thaliana] gi|5459298|emb|CAB50690
          Length = 552

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
 Frame = -2

Query: 738 DVSLVITKLSEFCFSRVL*TKLEXPCEQYHDTRXST*AFVRR--SSRHWQ*DSQRNFN-- 571
           DV+L      +  FS  + T++  P  +  D R      +R+  +SRHW+  S+ N +  
Sbjct: 164 DVNLFSRNDDDENFSGYIRTRMTRPVPRIGDRR------IRKILASRHWKGGSKNNTDAK 217

Query: 570 PWCEYCSVRSVLGIFT*HCTQEYALRLQGYPD 475
           PW  YCS RS    +  H  + Y ++ + Y D
Sbjct: 218 PW--YCSKRS---YYLHHHQRSYPIKKRKYFD 244


>At5g55893.1 68418.m06968 hypothetical protein
          Length = 266

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 576 NSFGNPTANAWSSFVRMLMWKXLYHDIARMA 668
           NSFG+P +  WSS   +L+ + ++  I++ A
Sbjct: 80  NSFGSPLSLTWSSLGTVLVARWIFEHISKTA 110


>At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to
           chromomethylase GB:AAC02660 GI:2865416 from [Arabidopsis
           thaliana]
          Length = 791

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 381 WSRL*EAISVMAE-ERTETARALSTQAVIDTDDLDNLATG 497
           W RL E  S+++  E  E+   L  + V + DD+D  +TG
Sbjct: 292 WKRLCEKFSLVSSTEPVESISELEDEEVEENDDIDEASTG 331


>At5g48520.1 68418.m05999 expressed protein similar to unknown
           protein (gb|AAB97010.1)
          Length = 671

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 379 FGAGYKRLSPLWQRNAQKQPGLY 447
           F A Y+++S +W RN   + G+Y
Sbjct: 226 FNAKYRQISSIWGRNFSSEDGIY 248


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,758,173
Number of Sequences: 28952
Number of extensions: 412130
Number of successful extensions: 988
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)