BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_O07 (858 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 6e-14 SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 2e-08 SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 32 0.52 SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31) 31 1.2 SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 31 1.2 SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7 SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064) 29 6.4 SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08) 29 6.4 SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018) 28 8.5 >SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 336 Score = 75.4 bits (177), Expect = 6e-14 Identities = 31/46 (67%), Positives = 40/46 (86%) Frame = +2 Query: 449 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEXD 586 +HPKFNFVGKLLGP+GNT K+LQ T KM++LG+GSMRD++KE + Sbjct: 111 DHPKFNFVGKLLGPRGNTFKRLQNSTGTKMSILGKGSMRDKEKEEE 156 Score = 40.3 bits (90), Expect = 0.002 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = +1 Query: 550 QGLNERQAKRXRLRQSLDPKYSHLADDLHVEISAIAPPAETXA 678 +G + K LR + DPKY+HL ++LHV I APP + A Sbjct: 145 KGSMRDKEKEEELRATEDPKYAHLGEELHVLIEVEAPPGQAHA 187 >SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 476 Score = 57.2 bits (132), Expect = 2e-08 Identities = 27/93 (29%), Positives = 50/93 (53%) Frame = +2 Query: 290 KLNNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNF 469 +LN F + +L D+ +Q +I D K ++ E+P+ NF Sbjct: 58 RLNTRDFRVRKRLEDERHKFIQDMMKINPDFKPPADYKPPLIKIQDKVMIPQDENPEVNF 117 Query: 470 VGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 568 +G L+GP+GNT+K ++++T K+ + G+GS++D Sbjct: 118 IGLLIGPRGNTLKNMEKETNAKIMIRGKGSIKD 150 >SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) Length = 3489 Score = 32.3 bits (70), Expect = 0.52 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%) Frame = +2 Query: 176 KRNTTQGKPEELDQNGEEGIKIN---EKAGEYMR-ELLSEKIKLNNSKFPLSMKLIDQEV 343 KR + K E++Q EE EK E MR E E++K + +KF +M + + +V Sbjct: 423 KRGCEEEKDSEIEQLREELRTTRDDFEKECERMRGEFQEERVK-DYAKFCTAMAVRNAQV 481 Query: 344 TKVQASGRITKDSKYVDVFRD 406 ++Q + +T K ++VFR+ Sbjct: 482 LEIQRAELLTDHEKEMEVFRE 502 >SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31) Length = 353 Score = 31.1 bits (67), Expect = 1.2 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +2 Query: 137 DKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINE 247 D NG+ SGD + ++T GKP + + E G KI + Sbjct: 11 DDSKANGHMSGDSQSSSTSGKPSQQESQTELGQKIEK 47 >SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) Length = 2123 Score = 31.1 bits (67), Expect = 1.2 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +2 Query: 137 DKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINE 247 D NG+ SGD + ++T GKP + + E G KI + Sbjct: 289 DDSKANGHMSGDSQSSSTSGKPSQQESQTELGQKIEK 325 >SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1548 Score = 29.5 bits (63), Expect = 3.7 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 6/98 (6%) Frame = +2 Query: 116 FDLIKMADKYDKNGYNSGDFKRNTTQGK-PEELDQN---GEEGIKINEKAGEYMRELLSE 283 F + YD G S D ++ TT+GK PE + +N G G + E + + + SE Sbjct: 659 FQTLDRKGGYDNPGQASDDDEKETTRGKAPEPIYENTKDGRCGSAVYENSNVALEAVTSE 718 Query: 284 KIKLNNSK-FPLS-MKLIDQEVTKVQASGRITKDSKYV 391 + L K F LS +L +EV V + + YV Sbjct: 719 GVGLAQVKCFNLSPEELESREVIPVDIAFDELPEKYYV 756 >SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064) Length = 1064 Score = 28.7 bits (61), Expect = 6.4 Identities = 12/27 (44%), Positives = 20/27 (74%) Frame = +2 Query: 305 KFPLSMKLIDQEVTKVQASGRITKDSK 385 K+ L M L+++ +T+V A GRIT+D + Sbjct: 764 KYGLRMSLLERLMTRVAAYGRITEDEE 790 >SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08) Length = 926 Score = 28.7 bits (61), Expect = 6.4 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 3/80 (3%) Frame = +2 Query: 146 DKNGYNSGDFKRNTTQGKPEELDQN-GEEGIKINEKAG-EYMREL-LSEKIKLNNSKFPL 316 D NGYN + NT Q + E +K+ A Y ++ I NN+ P+ Sbjct: 502 DMNGYNEVAARNNTAQALSTAIKLRVNNEFVKVTVDAWYRYSASFQMAGVITANNTSTPV 561 Query: 317 SMKLIDQEVTKVQASGRITK 376 S +I E KV A R K Sbjct: 562 SRSIISLEGQKVLAVRRSKK 581 >SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018) Length = 786 Score = 28.3 bits (60), Expect = 8.5 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +2 Query: 131 MADKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKI-KLNNSK 307 +A+ D + G+ + TQ EE+ Q E +K E+ R+ E++ K K Sbjct: 310 LAESLDPIFFVLGNQSNSETQEDLEEMRQ--AEKVKRREEKARLARQAAIEELQKKREEK 367 Query: 308 FPLSMKLIDQEVTKVQASGRITK 376 + + + E+ +QASG+++K Sbjct: 368 KQENQRKAEDEMKFLQASGKVSK 390 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,761,903 Number of Sequences: 59808 Number of extensions: 400876 Number of successful extensions: 1075 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 880 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1039 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2443309836 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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