BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_O07 (858 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna bin... 77 1e-14 AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna bin... 76 3e-14 AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna bin... 76 3e-14 Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical pr... 68 1e-11 U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein. 68 1e-11 AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical ... 60 3e-09 AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical ... 60 3e-09 AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 52 4e-07 AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 50 3e-06 AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 50 3e-06 Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical p... 49 5e-06 AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical ... 47 1e-05 U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical p... 45 6e-05 Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical pr... 32 0.45 Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical p... 31 1.1 Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical pr... 31 1.1 Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical pr... 31 1.1 U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein. 30 2.4 AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess... 30 2.4 AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess... 30 2.4 Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical pr... 29 4.2 AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 29 4.2 U80453-5|AAK31443.1| 378|Caenorhabditis elegans Hypothetical pr... 28 9.8 >AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna binding protein) familyprotein 2, isoform c protein. Length = 445 Score = 77.4 bits (182), Expect = 1e-14 Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 5/147 (3%) Frame = +2 Query: 155 GYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNN--SKFPLSMKL 328 G +SG + T + NG + + + EY+ +LL +K +L + F +L Sbjct: 37 GPSSGPPQVTITPSGVQSGSANGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERL 96 Query: 329 IDQEVTKVQA---SGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNFVGKLLGPKGN 499 D+E+ KV+ +K+S + EHP +NFVG++LGP+G Sbjct: 97 ADEEINKVRVVLFQCEFSKESAPLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGM 156 Query: 500 TMKQLQEDTLCKMAVLGRGSMRDRQKE 580 T KQL+++T CK+ V GRGSMRD++KE Sbjct: 157 TAKQLEQETGCKIMVRGRGSMRDKKKE 183 >AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna binding protein) familyprotein 2, isoform a protein. Length = 328 Score = 76.2 bits (179), Expect = 3e-14 Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 5/126 (3%) Frame = +2 Query: 218 NGEEGIKINEKAGEYMRELLSEKIKLNN--SKFPLSMKLIDQEVTKVQA---SGRITKDS 382 NG + + + EY+ +LL +K +L + F +L D+E+ KV+ +K+S Sbjct: 16 NGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERLADEEINKVRVVLFQCEFSKES 75 Query: 383 KYVDVFRDXXXXXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSM 562 + EHP +NFVG++LGP+G T KQL+++T CK+ V GRGSM Sbjct: 76 APLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSM 135 Query: 563 RDRQKE 580 RD++KE Sbjct: 136 RDKKKE 141 >AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna binding protein) familyprotein 2, isoform b protein. Length = 403 Score = 76.2 bits (179), Expect = 3e-14 Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 5/126 (3%) Frame = +2 Query: 218 NGEEGIKINEKAGEYMRELLSEKIKLNN--SKFPLSMKLIDQEVTKVQA---SGRITKDS 382 NG + + + EY+ +LL +K +L + F +L D+E+ KV+ +K+S Sbjct: 16 NGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERLADEEINKVRVVLFQCEFSKES 75 Query: 383 KYVDVFRDXXXXXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSM 562 + EHP +NFVG++LGP+G T KQL+++T CK+ V GRGSM Sbjct: 76 APLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSM 135 Query: 563 RDRQKE 580 RD++KE Sbjct: 136 RDKKKE 141 >Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical protein T23G11.3 protein. Length = 463 Score = 67.7 bits (158), Expect = 1e-11 Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 3/115 (2%) Frame = +2 Query: 245 EKAGEYMRELLSEK--IKLNNSKFPLSMKLIDQEVTKVQASGRITKDSKY-VDVFRDXXX 415 E EY+ +L+ EK + L F +L+D E+ +V+ + T+ + + Sbjct: 144 EATVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEFPRVELPEPAGDMI 203 Query: 416 XXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580 E+P +NFVG++LGP+G T KQL++DT CK+ V G+GSMRD+ KE Sbjct: 204 SITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKE 258 >U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein. Length = 463 Score = 67.7 bits (158), Expect = 1e-11 Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 3/115 (2%) Frame = +2 Query: 245 EKAGEYMRELLSEK--IKLNNSKFPLSMKLIDQEVTKVQASGRITKDSKY-VDVFRDXXX 415 E EY+ +L+ EK + L F +L+D E+ +V+ + T+ + + Sbjct: 144 EATVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEFPRVELPEPAGDMI 203 Query: 416 XXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580 E+P +NFVG++LGP+G T KQL++DT CK+ V G+GSMRD+ KE Sbjct: 204 SITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKE 258 >AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical protein E02D9.1b protein. Length = 315 Score = 59.7 bits (138), Expect = 3e-09 Identities = 24/45 (53%), Positives = 34/45 (75%) Frame = +2 Query: 452 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEXD 586 HP FNF+GK+LGPKG T++ L + C + +LGRGS +DR+KE + Sbjct: 140 HPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAE 184 Score = 34.7 bits (76), Expect = 0.085 Identities = 16/63 (25%), Positives = 30/63 (47%) Frame = +1 Query: 472 GKTIRSKRKHYEAITRRHTVQDGCTRQGLNERQAKRXRLRQSLDPKYSHLADDLHVEISA 651 GK + K + + + H +G + + K L S DP+++H + LHV++ Sbjct: 147 GKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDPQHAHFSGPLHVKVET 206 Query: 652 IAP 660 +AP Sbjct: 207 VAP 209 >AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical protein E02D9.1c protein. Length = 317 Score = 59.7 bits (138), Expect = 3e-09 Identities = 24/45 (53%), Positives = 34/45 (75%) Frame = +2 Query: 452 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEXD 586 HP FNF+GK+LGPKG T++ L + C + +LGRGS +DR+KE + Sbjct: 140 HPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAE 184 Score = 34.7 bits (76), Expect = 0.085 Identities = 16/63 (25%), Positives = 30/63 (47%) Frame = +1 Query: 472 GKTIRSKRKHYEAITRRHTVQDGCTRQGLNERQAKRXRLRQSLDPKYSHLADDLHVEISA 651 GK + K + + + H +G + + K L S DP+++H + LHV++ Sbjct: 147 GKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDPQHAHFSGPLHVKVET 206 Query: 652 IAP 660 +AP Sbjct: 207 VAP 209 >AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical protein Y69A2AR.32a protein. Length = 384 Score = 52.4 bits (120), Expect = 4e-07 Identities = 20/37 (54%), Positives = 32/37 (86%) Frame = +2 Query: 449 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGS 559 ++PK+NFVG++LGP+G T+KQL+++T C++ V GR S Sbjct: 81 KYPKYNFVGRILGPRGMTVKQLEKETGCRIFVRGRAS 117 >AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical protein Y116A8C.32 protein. Length = 699 Score = 49.6 bits (113), Expect = 3e-06 Identities = 27/93 (29%), Positives = 46/93 (49%) Frame = +2 Query: 290 KLNNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNF 469 +LN + +L K+QA +I + K +R + P NF Sbjct: 260 RLNTREVRKRQELEQLRHEKIQALLKINPNFKPPADYRAPNIRLHDKVWIPQEQFPDLNF 319 Query: 470 VGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 568 VG L+GP+GNT+K L+ +T K+ + G+GS+++ Sbjct: 320 VGLLIGPRGNTLKSLEAETGAKIIIRGKGSIKE 352 >AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein protein. Length = 699 Score = 49.6 bits (113), Expect = 3e-06 Identities = 27/93 (29%), Positives = 46/93 (49%) Frame = +2 Query: 290 KLNNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNF 469 +LN + +L K+QA +I + K +R + P NF Sbjct: 260 RLNTREVRKRQELEQLRHEKIQALLKINPNFKPPADYRAPNIRLHDKVWIPQEQFPDLNF 319 Query: 470 VGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 568 VG L+GP+GNT+K L+ +T K+ + G+GS+++ Sbjct: 320 VGLLIGPRGNTLKSLEAETGAKIIIRGKGSIKE 352 >Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical protein Y57G11C.36 protein. Length = 380 Score = 48.8 bits (111), Expect = 5e-06 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 3/147 (2%) Frame = +2 Query: 122 LIKMADKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKL-- 295 L+++A+K+ + + ++ + + + +E K Y+ L EK +L Sbjct: 14 LLRLAEKHQHSSLLTPPPSDDSQKSLKSTSNHSDQEMSKNLHDVEAYIDALKGEKHQLAQ 73 Query: 296 -NNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNFV 472 ++ F LID+E+ KV + S+ + P +NFV Sbjct: 74 YSSGGFNHVFNLIDKEIQKVGGNDAHDGGSQ----MSGDGSMLTETIMVPVEKFPDYNFV 129 Query: 473 GKLLGPKGNTMKQLQEDTLCKMAVLGR 553 G+LLGP+G T KQL+ T C++ +LGR Sbjct: 130 GRLLGPRGTTAKQLEVTTGCRITILGR 156 >AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical protein K07H8.9 protein. Length = 254 Score = 47.2 bits (107), Expect = 1e-05 Identities = 16/36 (44%), Positives = 28/36 (77%) Frame = +2 Query: 452 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGS 559 +P +NF+G+++GP+G T KQL++DT C++ + G S Sbjct: 132 YPTYNFIGRIIGPRGTTAKQLEKDTGCRIMIRGNHS 167 >U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical protein B0280.17 protein. Length = 235 Score = 45.2 bits (102), Expect = 6e-05 Identities = 18/39 (46%), Positives = 29/39 (74%) Frame = +2 Query: 464 NFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580 N VG+L+GP+G T++QL++D CK+ + G+G +D KE Sbjct: 129 NPVGRLIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAKE 167 >Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical protein F54D1.1 protein. Length = 278 Score = 32.3 bits (70), Expect = 0.45 Identities = 11/38 (28%), Positives = 24/38 (63%) Frame = +2 Query: 458 KFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDR 571 K N++G++LGP G + + ++ + + G GS+R++ Sbjct: 151 KCNYIGRILGPSGMSARMIENQYDVTLLIRGAGSVRNK 188 >Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical protein C12D8.1c protein. Length = 548 Score = 31.1 bits (67), Expect = 1.1 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +2 Query: 464 NFVGKLLGPKGNTMKQLQEDTLCKM-AVLGRGSMRDRQK 577 N G ++G G+T++QLQE + CKM V S+ D+ K Sbjct: 101 NRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSK 139 >Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical protein C12D8.1b protein. Length = 611 Score = 31.1 bits (67), Expect = 1.1 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +2 Query: 464 NFVGKLLGPKGNTMKQLQEDTLCKM-AVLGRGSMRDRQK 577 N G ++G G+T++QLQE + CKM V S+ D+ K Sbjct: 164 NRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSK 202 >Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical protein C12D8.1a protein. Length = 589 Score = 31.1 bits (67), Expect = 1.1 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +2 Query: 464 NFVGKLLGPKGNTMKQLQEDTLCKM-AVLGRGSMRDRQK 577 N G ++G G+T++QLQE + CKM V S+ D+ K Sbjct: 142 NRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSK 180 >U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein. Length = 415 Score = 29.9 bits (64), Expect = 2.4 Identities = 11/19 (57%), Positives = 17/19 (89%) Frame = +2 Query: 470 VGKLLGPKGNTMKQLQEDT 526 VG ++GPKG T+K++Q+DT Sbjct: 148 VGLVVGPKGATIKRIQQDT 166 >AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess protein 3, isoform a protein. Length = 415 Score = 29.9 bits (64), Expect = 2.4 Identities = 11/19 (57%), Positives = 17/19 (89%) Frame = +2 Query: 470 VGKLLGPKGNTMKQLQEDT 526 VG ++GPKG T+K++Q+DT Sbjct: 148 VGLVVGPKGATIKRIQQDT 166 >AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess protein 3, isoform b protein. Length = 443 Score = 29.9 bits (64), Expect = 2.4 Identities = 11/19 (57%), Positives = 17/19 (89%) Frame = +2 Query: 470 VGKLLGPKGNTMKQLQEDT 526 VG ++GPKG T+K++Q+DT Sbjct: 176 VGLVVGPKGATIKRIQQDT 194 >Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical protein C14B1.6 protein. Length = 793 Score = 29.1 bits (62), Expect = 4.2 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -1 Query: 564 LIEPLPSTAILHSVSSCNCFIVFPF 490 L+EP+ I H V CNC++ PF Sbjct: 746 LLEPIYRAYINHFVDECNCYLKGPF 770 >AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome regulatory particle,non-atpase-like protein 1 protein. Length = 981 Score = 29.1 bits (62), Expect = 4.2 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = +2 Query: 185 TTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQAS 361 TTQ P+E D+ + K+ EKA E+ E KL L +L + + T + S Sbjct: 4 TTQQTPKEADKKKADDKKVPEKAEPKKEEMSEEDQKLEEDLNLLVQRLSEPDTTLYKPS 62 >U80453-5|AAK31443.1| 378|Caenorhabditis elegans Hypothetical protein C23H3.3 protein. Length = 378 Score = 27.9 bits (59), Expect = 9.8 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = +2 Query: 467 FVGKLLGPKGNTMKQLQEDTLCKM 538 F+GKL+G T+ L+ +T C++ Sbjct: 111 FIGKLIGTNRRTLNSLENETQCRV 134 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,314,696 Number of Sequences: 27780 Number of extensions: 325997 Number of successful extensions: 801 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 732 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 801 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2139963672 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -