Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_O07
(858 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna bin... 77 1e-14
AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna bin... 76 3e-14
AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna bin... 76 3e-14
Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical pr... 68 1e-11
U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein. 68 1e-11
AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical ... 60 3e-09
AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical ... 60 3e-09
AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 52 4e-07
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 50 3e-06
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 50 3e-06
Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical p... 49 5e-06
AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical ... 47 1e-05
U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical p... 45 6e-05
Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical p... 31 1.1
Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical pr... 31 1.1
U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein. 30 2.4
AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess... 30 2.4
AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess... 30 2.4
Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 29 4.2
U80453-5|AAK31443.1| 378|Caenorhabditis elegans Hypothetical pr... 28 9.8
>AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform c protein.
Length = 445
Score = 77.4 bits (182), Expect = 1e-14
Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 5/147 (3%)
Frame = +2
Query: 155 GYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNN--SKFPLSMKL 328
G +SG + T + NG + + + EY+ +LL +K +L + F +L
Sbjct: 37 GPSSGPPQVTITPSGVQSGSANGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERL 96
Query: 329 IDQEVTKVQA---SGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNFVGKLLGPKGN 499
D+E+ KV+ +K+S + EHP +NFVG++LGP+G
Sbjct: 97 ADEEINKVRVVLFQCEFSKESAPLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGM 156
Query: 500 TMKQLQEDTLCKMAVLGRGSMRDRQKE 580
T KQL+++T CK+ V GRGSMRD++KE
Sbjct: 157 TAKQLEQETGCKIMVRGRGSMRDKKKE 183
>AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform a protein.
Length = 328
Score = 76.2 bits (179), Expect = 3e-14
Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 5/126 (3%)
Frame = +2
Query: 218 NGEEGIKINEKAGEYMRELLSEKIKLNN--SKFPLSMKLIDQEVTKVQA---SGRITKDS 382
NG + + + EY+ +LL +K +L + F +L D+E+ KV+ +K+S
Sbjct: 16 NGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERLADEEINKVRVVLFQCEFSKES 75
Query: 383 KYVDVFRDXXXXXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSM 562
+ EHP +NFVG++LGP+G T KQL+++T CK+ V GRGSM
Sbjct: 76 APLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSM 135
Query: 563 RDRQKE 580
RD++KE
Sbjct: 136 RDKKKE 141
>AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform b protein.
Length = 403
Score = 76.2 bits (179), Expect = 3e-14
Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 5/126 (3%)
Frame = +2
Query: 218 NGEEGIKINEKAGEYMRELLSEKIKLNN--SKFPLSMKLIDQEVTKVQA---SGRITKDS 382
NG + + + EY+ +LL +K +L + F +L D+E+ KV+ +K+S
Sbjct: 16 NGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERLADEEINKVRVVLFQCEFSKES 75
Query: 383 KYVDVFRDXXXXXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSM 562
+ EHP +NFVG++LGP+G T KQL+++T CK+ V GRGSM
Sbjct: 76 APLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSM 135
Query: 563 RDRQKE 580
RD++KE
Sbjct: 136 RDKKKE 141
>Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical
protein T23G11.3 protein.
Length = 463
Score = 67.7 bits (158), Expect = 1e-11
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Frame = +2
Query: 245 EKAGEYMRELLSEK--IKLNNSKFPLSMKLIDQEVTKVQASGRITKDSKY-VDVFRDXXX 415
E EY+ +L+ EK + L F +L+D E+ +V+ + T+ + +
Sbjct: 144 EATVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEFPRVELPEPAGDMI 203
Query: 416 XXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580
E+P +NFVG++LGP+G T KQL++DT CK+ V G+GSMRD+ KE
Sbjct: 204 SITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKE 258
>U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein.
Length = 463
Score = 67.7 bits (158), Expect = 1e-11
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Frame = +2
Query: 245 EKAGEYMRELLSEK--IKLNNSKFPLSMKLIDQEVTKVQASGRITKDSKY-VDVFRDXXX 415
E EY+ +L+ EK + L F +L+D E+ +V+ + T+ + +
Sbjct: 144 EATVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEFPRVELPEPAGDMI 203
Query: 416 XXXXXXXXXXXEHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580
E+P +NFVG++LGP+G T KQL++DT CK+ V G+GSMRD+ KE
Sbjct: 204 SITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKE 258
>AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical
protein E02D9.1b protein.
Length = 315
Score = 59.7 bits (138), Expect = 3e-09
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +2
Query: 452 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEXD 586
HP FNF+GK+LGPKG T++ L + C + +LGRGS +DR+KE +
Sbjct: 140 HPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAE 184
Score = 34.7 bits (76), Expect = 0.085
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +1
Query: 472 GKTIRSKRKHYEAITRRHTVQDGCTRQGLNERQAKRXRLRQSLDPKYSHLADDLHVEISA 651
GK + K + + + H +G + + K L S DP+++H + LHV++
Sbjct: 147 GKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDPQHAHFSGPLHVKVET 206
Query: 652 IAP 660
+AP
Sbjct: 207 VAP 209
>AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical
protein E02D9.1c protein.
Length = 317
Score = 59.7 bits (138), Expect = 3e-09
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +2
Query: 452 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKEXD 586
HP FNF+GK+LGPKG T++ L + C + +LGRGS +DR+KE +
Sbjct: 140 HPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAE 184
Score = 34.7 bits (76), Expect = 0.085
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +1
Query: 472 GKTIRSKRKHYEAITRRHTVQDGCTRQGLNERQAKRXRLRQSLDPKYSHLADDLHVEISA 651
GK + K + + + H +G + + K L S DP+++H + LHV++
Sbjct: 147 GKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDPQHAHFSGPLHVKVET 206
Query: 652 IAP 660
+AP
Sbjct: 207 VAP 209
>AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32a protein.
Length = 384
Score = 52.4 bits (120), Expect = 4e-07
Identities = 20/37 (54%), Positives = 32/37 (86%)
Frame = +2
Query: 449 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGS 559
++PK+NFVG++LGP+G T+KQL+++T C++ V GR S
Sbjct: 81 KYPKYNFVGRILGPRGMTVKQLEKETGCRIFVRGRAS 117
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 49.6 bits (113), Expect = 3e-06
Identities = 27/93 (29%), Positives = 46/93 (49%)
Frame = +2
Query: 290 KLNNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNF 469
+LN + +L K+QA +I + K +R + P NF
Sbjct: 260 RLNTREVRKRQELEQLRHEKIQALLKINPNFKPPADYRAPNIRLHDKVWIPQEQFPDLNF 319
Query: 470 VGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 568
VG L+GP+GNT+K L+ +T K+ + G+GS+++
Sbjct: 320 VGLLIGPRGNTLKSLEAETGAKIIIRGKGSIKE 352
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 49.6 bits (113), Expect = 3e-06
Identities = 27/93 (29%), Positives = 46/93 (49%)
Frame = +2
Query: 290 KLNNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNF 469
+LN + +L K+QA +I + K +R + P NF
Sbjct: 260 RLNTREVRKRQELEQLRHEKIQALLKINPNFKPPADYRAPNIRLHDKVWIPQEQFPDLNF 319
Query: 470 VGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 568
VG L+GP+GNT+K L+ +T K+ + G+GS+++
Sbjct: 320 VGLLIGPRGNTLKSLEAETGAKIIIRGKGSIKE 352
>Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical
protein Y57G11C.36 protein.
Length = 380
Score = 48.8 bits (111), Expect = 5e-06
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 3/147 (2%)
Frame = +2
Query: 122 LIKMADKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKL-- 295
L+++A+K+ + + ++ + + + +E K Y+ L EK +L
Sbjct: 14 LLRLAEKHQHSSLLTPPPSDDSQKSLKSTSNHSDQEMSKNLHDVEAYIDALKGEKHQLAQ 73
Query: 296 -NNSKFPLSMKLIDQEVTKVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNFV 472
++ F LID+E+ KV + S+ + P +NFV
Sbjct: 74 YSSGGFNHVFNLIDKEIQKVGGNDAHDGGSQ----MSGDGSMLTETIMVPVEKFPDYNFV 129
Query: 473 GKLLGPKGNTMKQLQEDTLCKMAVLGR 553
G+LLGP+G T KQL+ T C++ +LGR
Sbjct: 130 GRLLGPRGTTAKQLEVTTGCRITILGR 156
>AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical
protein K07H8.9 protein.
Length = 254
Score = 47.2 bits (107), Expect = 1e-05
Identities = 16/36 (44%), Positives = 28/36 (77%)
Frame = +2
Query: 452 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGS 559
+P +NF+G+++GP+G T KQL++DT C++ + G S
Sbjct: 132 YPTYNFIGRIIGPRGTTAKQLEKDTGCRIMIRGNHS 167
>U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical
protein B0280.17 protein.
Length = 235
Score = 45.2 bits (102), Expect = 6e-05
Identities = 18/39 (46%), Positives = 29/39 (74%)
Frame = +2
Query: 464 NFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580
N VG+L+GP+G T++QL++D CK+ + G+G +D KE
Sbjct: 129 NPVGRLIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAKE 167
>Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical
protein F54D1.1 protein.
Length = 278
Score = 32.3 bits (70), Expect = 0.45
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +2
Query: 458 KFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDR 571
K N++G++LGP G + + ++ + + G GS+R++
Sbjct: 151 KCNYIGRILGPSGMSARMIENQYDVTLLIRGAGSVRNK 188
>Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical
protein C12D8.1c protein.
Length = 548
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 464 NFVGKLLGPKGNTMKQLQEDTLCKM-AVLGRGSMRDRQK 577
N G ++G G+T++QLQE + CKM V S+ D+ K
Sbjct: 101 NRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSK 139
>Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical
protein C12D8.1b protein.
Length = 611
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 464 NFVGKLLGPKGNTMKQLQEDTLCKM-AVLGRGSMRDRQK 577
N G ++G G+T++QLQE + CKM V S+ D+ K
Sbjct: 164 NRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSK 202
>Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical
protein C12D8.1a protein.
Length = 589
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 464 NFVGKLLGPKGNTMKQLQEDTLCKM-AVLGRGSMRDRQK 577
N G ++G G+T++QLQE + CKM V S+ D+ K
Sbjct: 142 NRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQSK 180
>U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein.
Length = 415
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +2
Query: 470 VGKLLGPKGNTMKQLQEDT 526
VG ++GPKG T+K++Q+DT
Sbjct: 148 VGLVVGPKGATIKRIQQDT 166
>AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess
protein 3, isoform a protein.
Length = 415
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +2
Query: 470 VGKLLGPKGNTMKQLQEDT 526
VG ++GPKG T+K++Q+DT
Sbjct: 148 VGLVVGPKGATIKRIQQDT 166
>AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess
protein 3, isoform b protein.
Length = 443
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +2
Query: 470 VGKLLGPKGNTMKQLQEDT 526
VG ++GPKG T+K++Q+DT
Sbjct: 176 VGLVVGPKGATIKRIQQDT 194
>Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical
protein C14B1.6 protein.
Length = 793
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 564 LIEPLPSTAILHSVSSCNCFIVFPF 490
L+EP+ I H V CNC++ PF
Sbjct: 746 LLEPIYRAYINHFVDECNCYLKGPF 770
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 185 TTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQAS 361
TTQ P+E D+ + K+ EKA E+ E KL L +L + + T + S
Sbjct: 4 TTQQTPKEADKKKADDKKVPEKAEPKKEEMSEEDQKLEEDLNLLVQRLSEPDTTLYKPS 62
>U80453-5|AAK31443.1| 378|Caenorhabditis elegans Hypothetical
protein C23H3.3 protein.
Length = 378
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 467 FVGKLLGPKGNTMKQLQEDTLCKM 538
F+GKL+G T+ L+ +T C++
Sbjct: 111 FIGKLIGTNRRTLNSLENETQCRV 134
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,314,696
Number of Sequences: 27780
Number of extensions: 325997
Number of successful extensions: 801
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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