BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_FL5_O07 (858 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g56140.1 68418.m07003 KH domain-containing protein 58 1e-08 At3g08620.1 68416.m01001 KH domain-containing protein 58 1e-08 At2g38610.2 68415.m04743 KH domain-containing protein 58 1e-08 At2g38610.1 68415.m04742 KH domain-containing protein 58 1e-08 At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus... 57 2e-08 At1g09660.2 68414.m01085 KH domain-containing quaking protein, p... 55 5e-08 At1g09660.1 68414.m01084 KH domain-containing quaking protein, p... 55 5e-08 At5g51300.2 68418.m06360 splicing factor-related contains simila... 48 6e-06 At5g51300.1 68418.m06359 splicing factor-related contains simila... 48 6e-06 At3g32940.1 68416.m04174 expressed protein 33 0.18 At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to SW... 31 0.98 At1g22400.1 68414.m02801 UDP-glucoronosyl/UDP-glucosyl transfera... 31 0.98 At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 30 2.3 At1g22380.1 68414.m02799 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.0 At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 29 4.0 At3g28270.2 68416.m03531 expressed protein similar to At14a prot... 29 4.0 At3g28270.1 68416.m03530 expressed protein similar to At14a prot... 29 4.0 At5g64390.2 68418.m08088 KH domain-containing RNA-binding protei... 29 5.2 At5g64390.1 68418.m08089 KH domain-containing RNA-binding protei... 29 5.2 At5g52280.1 68418.m06488 protein transport protein-related low s... 28 6.9 At5g16720.1 68418.m01958 expressed protein contains Pfam profile... 28 6.9 >At5g56140.1 68418.m07003 KH domain-containing protein Length = 315 Score = 57.6 bits (133), Expect = 1e-08 Identities = 22/43 (51%), Positives = 35/43 (81%) Frame = +2 Query: 452 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580 +P FNFVG+LLGP+GN++K+++ T C++ + GRGS++D KE Sbjct: 177 YPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKE 219 >At3g08620.1 68416.m01001 KH domain-containing protein Length = 283 Score = 57.6 bits (133), Expect = 1e-08 Identities = 21/43 (48%), Positives = 36/43 (83%) Frame = +2 Query: 452 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580 +P FNFVG+LLGP+GN++K+++ T C++ + G+GS++D +KE Sbjct: 146 YPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKE 188 >At2g38610.2 68415.m04743 KH domain-containing protein Length = 286 Score = 57.6 bits (133), Expect = 1e-08 Identities = 21/43 (48%), Positives = 36/43 (83%) Frame = +2 Query: 452 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580 +P FNFVG+LLGP+GN++K+++ T C++ + G+GS++D +KE Sbjct: 147 YPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKE 189 >At2g38610.1 68415.m04742 KH domain-containing protein Length = 286 Score = 57.6 bits (133), Expect = 1e-08 Identities = 21/43 (48%), Positives = 36/43 (83%) Frame = +2 Query: 452 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580 +P FNFVG+LLGP+GN++K+++ T C++ + G+GS++D +KE Sbjct: 147 YPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKE 189 >At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus musculus Length = 555 Score = 56.8 bits (131), Expect = 2e-08 Identities = 21/44 (47%), Positives = 36/44 (81%) Frame = +2 Query: 449 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580 ++P +NFVG+LLGP+GN++K+++ T C++ + GRGS++D KE Sbjct: 417 KYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKE 460 >At1g09660.2 68414.m01085 KH domain-containing quaking protein, putative similar to GB:AAC67357 Length = 264 Score = 55.2 bits (127), Expect = 5e-08 Identities = 20/44 (45%), Positives = 36/44 (81%) Frame = +2 Query: 449 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580 ++P +NFVG++LGP+GN++K+++ T C++ + GRGS++D KE Sbjct: 157 KYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKE 200 >At1g09660.1 68414.m01084 KH domain-containing quaking protein, putative similar to GB:AAC67357 Length = 298 Score = 55.2 bits (127), Expect = 5e-08 Identities = 20/44 (45%), Positives = 36/44 (81%) Frame = +2 Query: 449 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580 ++P +NFVG++LGP+GN++K+++ T C++ + GRGS++D KE Sbjct: 157 KYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKE 200 >At5g51300.2 68418.m06360 splicing factor-related contains similarity to SF1 protein [Drosophila melanogaster] GI:6687400 Length = 804 Score = 48.4 bits (110), Expect = 6e-06 Identities = 16/40 (40%), Positives = 31/40 (77%) Frame = +2 Query: 449 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 568 E P +NF+G ++GP+GNT K+++ +T K+ + G+GS+++ Sbjct: 251 EFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKE 290 >At5g51300.1 68418.m06359 splicing factor-related contains similarity to SF1 protein [Drosophila melanogaster] GI:6687400 Length = 804 Score = 48.4 bits (110), Expect = 6e-06 Identities = 16/40 (40%), Positives = 31/40 (77%) Frame = +2 Query: 449 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 568 E P +NF+G ++GP+GNT K+++ +T K+ + G+GS+++ Sbjct: 251 EFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKE 290 >At3g32940.1 68416.m04174 expressed protein Length = 607 Score = 33.5 bits (73), Expect = 0.18 Identities = 12/34 (35%), Positives = 23/34 (67%) Frame = +2 Query: 449 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLG 550 EH F+F+ + G +G+T K+L+++T K+ + G Sbjct: 143 EHSDFSFLSLIFGSQGDTQKRLEKETGAKVQIFG 176 >At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to SWISS-PROT:P48731 homeobox protein ATH1. [Arabidopsis thaliana] Length = 473 Score = 31.1 bits (67), Expect = 0.98 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +1 Query: 547 RQGLNERQAKRXRLRQSLDPKYSHLADDLHVEISAIAPPAE 669 R+ L ++ L Q +D +YSH D++H ISA E Sbjct: 267 RRALEAKKTHLLDLLQMVDDRYSHCVDEIHTVISAFHAATE 307 >At1g22400.1 68414.m02801 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Length = 489 Score = 31.1 bits (67), Expect = 0.98 Identities = 20/50 (40%), Positives = 28/50 (56%) Frame = +2 Query: 137 DKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEK 286 D++D GD KR + EL +GE+G K+ EKA E+ R L+EK Sbjct: 415 DEWDVGIEIGGDVKREEVEAVVREL-MDGEKGKKMREKAVEWQR--LAEK 461 >At3g04610.1 68416.m00493 KH domain-containing protein similar putative nucleic acid binding protein GB:CAB39665 [Arabidopsis thaliana]; Pfam HMM hit: KH domain family of RNA binding proteins Length = 577 Score = 29.9 bits (64), Expect = 2.3 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +2 Query: 473 GKLLGPKGNTMKQLQEDTLCKMAVLG 550 G L+G +G T+K +QE + C + VLG Sbjct: 289 GSLIGKQGGTVKAIQEASACIVRVLG 314 >At1g22380.1 68414.m02799 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Length = 467 Score = 29.5 bits (63), Expect = 3.0 Identities = 22/58 (37%), Positives = 31/58 (53%) Frame = +2 Query: 167 GDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQE 340 GD KR + EL +GE+G K+ EKA E+ R L+EK +K P +I+ E Sbjct: 403 GDVKRGEVEAVVREL-MDGEKGKKMREKAVEWRR--LAEKA----TKLPCGSSVINFE 453 >At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / EF-1-alpha, putative contains similarity to SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha) [Aeropyrum pernix] Length = 667 Score = 29.1 bits (62), Expect = 4.0 Identities = 10/42 (23%), Positives = 20/42 (47%) Frame = +3 Query: 375 RTQNMWMCSVTNQPKSQLKFLCQLRNILNSTLWENY*VQKET 500 +TQ +W C++ + F+C + +L + N + K T Sbjct: 47 KTQGLWRCAICTYDNVETMFVCDICGVLRHPVAGNQSINKNT 88 >At3g28270.2 68416.m03531 expressed protein similar to At14a protein (GI:11994571 and GI:11994573) [Arabidopsis thaliana] Length = 374 Score = 29.1 bits (62), Expect = 4.0 Identities = 20/66 (30%), Positives = 33/66 (50%) Frame = +2 Query: 197 KPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQASGRITK 376 K EE++++ E+GIK NE+A E + L+ + L ID E + +T+ Sbjct: 276 KVEEIEESVEKGIKTNEEATETVSILVDGLEDRIKNMLKLVDNAIDHEDNEAATRIVLTQ 335 Query: 377 DSKYVD 394 SK V+ Sbjct: 336 ISKKVE 341 >At3g28270.1 68416.m03530 expressed protein similar to At14a protein (GI:11994571 and GI:11994573) [Arabidopsis thaliana] Length = 374 Score = 29.1 bits (62), Expect = 4.0 Identities = 20/66 (30%), Positives = 33/66 (50%) Frame = +2 Query: 197 KPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQASGRITK 376 K EE++++ E+GIK NE+A E + L+ + L ID E + +T+ Sbjct: 276 KVEEIEESVEKGIKTNEEATETVSILVDGLEDRIKNMLKLVDNAIDHEDNEAATRIVLTQ 335 Query: 377 DSKYVD 394 SK V+ Sbjct: 336 ISKKVE 341 >At5g64390.2 68418.m08088 KH domain-containing RNA-binding protein (HEN4) contains similarity to RNA-binding protein; identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404; contains Pfam domain PF00013: KH domain; identical to cDNA HEN4 (HEN4) GI:28261402 Length = 824 Score = 28.7 bits (61), Expect = 5.2 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 Query: 470 VGKLLGPKGNTMKQLQEDTLCKMAV 544 VG ++G GN +KQLQ+ T K+ V Sbjct: 58 VGAVIGKSGNVIKQLQQSTGAKIRV 82 >At5g64390.1 68418.m08089 KH domain-containing RNA-binding protein (HEN4) contains similarity to RNA-binding protein; identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404; contains Pfam domain PF00013: KH domain; identical to cDNA HEN4 (HEN4) GI:28261402 Length = 857 Score = 28.7 bits (61), Expect = 5.2 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 Query: 470 VGKLLGPKGNTMKQLQEDTLCKMAV 544 VG ++G GN +KQLQ+ T K+ V Sbjct: 58 VGAVIGKSGNVIKQLQQSTGAKIRV 82 >At5g52280.1 68418.m06488 protein transport protein-related low similarity to SP|P25386 Intracellular protein transport protein USO1 {Saccharomyces cerevisiae} Length = 853 Score = 28.3 bits (60), Expect = 6.9 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Frame = +2 Query: 122 LIKMADKYDKN-GYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLN 298 L++ A K +++ G +SG+ + +T + + E+LD + K NE+ + EL E L Sbjct: 406 LLEEAKKLEEHKGMDSGNNEIDTLKQQIEDLDWELDSYKKKNEEQEILLDELTQEYESLK 465 Query: 299 NSKFP-LSMKLIDQEVTKVQASGRITKD 379 + +S KL QE + + +KD Sbjct: 466 EENYKNVSSKLEQQECSNAEDEYLDSKD 493 >At5g16720.1 68418.m01958 expressed protein contains Pfam profile PF04576: Protein of unknown function, DUF593 Length = 675 Score = 28.3 bits (60), Expect = 6.9 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = +2 Query: 146 DKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSE 283 D+ Y G F+ +GK ++ QNGE I E G +RE+ E Sbjct: 178 DRESYPLGFFRDKAEEGKKQDQQQNGEV-ISDVESYGLSLREVSEE 222 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,137,022 Number of Sequences: 28952 Number of extensions: 289005 Number of successful extensions: 760 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 667 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 731 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1999652000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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