Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_O07
(858 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56140.1 68418.m07003 KH domain-containing protein 58 1e-08
At3g08620.1 68416.m01001 KH domain-containing protein 58 1e-08
At2g38610.2 68415.m04743 KH domain-containing protein 58 1e-08
At2g38610.1 68415.m04742 KH domain-containing protein 58 1e-08
At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus... 57 2e-08
At1g09660.2 68414.m01085 KH domain-containing quaking protein, p... 55 5e-08
At1g09660.1 68414.m01084 KH domain-containing quaking protein, p... 55 5e-08
At5g51300.2 68418.m06360 splicing factor-related contains simila... 48 6e-06
At5g51300.1 68418.m06359 splicing factor-related contains simila... 48 6e-06
At3g32940.1 68416.m04174 expressed protein 33 0.18
At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to SW... 31 0.98
At1g22400.1 68414.m02801 UDP-glucoronosyl/UDP-glucosyl transfera... 31 0.98
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 30 2.3
At1g22380.1 68414.m02799 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.0
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 29 4.0
At3g28270.2 68416.m03531 expressed protein similar to At14a prot... 29 4.0
At3g28270.1 68416.m03530 expressed protein similar to At14a prot... 29 4.0
At5g64390.2 68418.m08088 KH domain-containing RNA-binding protei... 29 5.2
At5g64390.1 68418.m08089 KH domain-containing RNA-binding protei... 29 5.2
At5g52280.1 68418.m06488 protein transport protein-related low s... 28 6.9
At5g16720.1 68418.m01958 expressed protein contains Pfam profile... 28 6.9
>At5g56140.1 68418.m07003 KH domain-containing protein
Length = 315
Score = 57.6 bits (133), Expect = 1e-08
Identities = 22/43 (51%), Positives = 35/43 (81%)
Frame = +2
Query: 452 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580
+P FNFVG+LLGP+GN++K+++ T C++ + GRGS++D KE
Sbjct: 177 YPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKE 219
>At3g08620.1 68416.m01001 KH domain-containing protein
Length = 283
Score = 57.6 bits (133), Expect = 1e-08
Identities = 21/43 (48%), Positives = 36/43 (83%)
Frame = +2
Query: 452 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580
+P FNFVG+LLGP+GN++K+++ T C++ + G+GS++D +KE
Sbjct: 146 YPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKE 188
>At2g38610.2 68415.m04743 KH domain-containing protein
Length = 286
Score = 57.6 bits (133), Expect = 1e-08
Identities = 21/43 (48%), Positives = 36/43 (83%)
Frame = +2
Query: 452 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580
+P FNFVG+LLGP+GN++K+++ T C++ + G+GS++D +KE
Sbjct: 147 YPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKE 189
>At2g38610.1 68415.m04742 KH domain-containing protein
Length = 286
Score = 57.6 bits (133), Expect = 1e-08
Identities = 21/43 (48%), Positives = 36/43 (83%)
Frame = +2
Query: 452 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580
+P FNFVG+LLGP+GN++K+++ T C++ + G+GS++D +KE
Sbjct: 147 YPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKE 189
>At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus
musculus
Length = 555
Score = 56.8 bits (131), Expect = 2e-08
Identities = 21/44 (47%), Positives = 36/44 (81%)
Frame = +2
Query: 449 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580
++P +NFVG+LLGP+GN++K+++ T C++ + GRGS++D KE
Sbjct: 417 KYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKE 460
>At1g09660.2 68414.m01085 KH domain-containing quaking protein,
putative similar to GB:AAC67357
Length = 264
Score = 55.2 bits (127), Expect = 5e-08
Identities = 20/44 (45%), Positives = 36/44 (81%)
Frame = +2
Query: 449 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580
++P +NFVG++LGP+GN++K+++ T C++ + GRGS++D KE
Sbjct: 157 KYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKE 200
>At1g09660.1 68414.m01084 KH domain-containing quaking protein,
putative similar to GB:AAC67357
Length = 298
Score = 55.2 bits (127), Expect = 5e-08
Identities = 20/44 (45%), Positives = 36/44 (81%)
Frame = +2
Query: 449 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580
++P +NFVG++LGP+GN++K+++ T C++ + GRGS++D KE
Sbjct: 157 KYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKE 200
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 48.4 bits (110), Expect = 6e-06
Identities = 16/40 (40%), Positives = 31/40 (77%)
Frame = +2
Query: 449 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 568
E P +NF+G ++GP+GNT K+++ +T K+ + G+GS+++
Sbjct: 251 EFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKE 290
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 48.4 bits (110), Expect = 6e-06
Identities = 16/40 (40%), Positives = 31/40 (77%)
Frame = +2
Query: 449 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 568
E P +NF+G ++GP+GNT K+++ +T K+ + G+GS+++
Sbjct: 251 EFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKE 290
>At3g32940.1 68416.m04174 expressed protein
Length = 607
Score = 33.5 bits (73), Expect = 0.18
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 449 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLG 550
EH F+F+ + G +G+T K+L+++T K+ + G
Sbjct: 143 EHSDFSFLSLIFGSQGDTQKRLEKETGAKVQIFG 176
>At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to
SWISS-PROT:P48731 homeobox protein ATH1. [Arabidopsis
thaliana]
Length = 473
Score = 31.1 bits (67), Expect = 0.98
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 547 RQGLNERQAKRXRLRQSLDPKYSHLADDLHVEISAIAPPAE 669
R+ L ++ L Q +D +YSH D++H ISA E
Sbjct: 267 RRALEAKKTHLLDLLQMVDDRYSHCVDEIHTVISAFHAATE 307
>At1g22400.1 68414.m02801 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 489
Score = 31.1 bits (67), Expect = 0.98
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +2
Query: 137 DKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEK 286
D++D GD KR + EL +GE+G K+ EKA E+ R L+EK
Sbjct: 415 DEWDVGIEIGGDVKREEVEAVVREL-MDGEKGKKMREKAVEWQR--LAEK 461
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 473 GKLLGPKGNTMKQLQEDTLCKMAVLG 550
G L+G +G T+K +QE + C + VLG
Sbjct: 289 GSLIGKQGGTVKAIQEASACIVRVLG 314
>At1g22380.1 68414.m02799 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 467
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +2
Query: 167 GDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQE 340
GD KR + EL +GE+G K+ EKA E+ R L+EK +K P +I+ E
Sbjct: 403 GDVKRGEVEAVVREL-MDGEKGKKMREKAVEWRR--LAEKA----TKLPCGSSVINFE 453
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +3
Query: 375 RTQNMWMCSVTNQPKSQLKFLCQLRNILNSTLWENY*VQKET 500
+TQ +W C++ + F+C + +L + N + K T
Sbjct: 47 KTQGLWRCAICTYDNVETMFVCDICGVLRHPVAGNQSINKNT 88
>At3g28270.2 68416.m03531 expressed protein similar to At14a protein
(GI:11994571 and GI:11994573) [Arabidopsis thaliana]
Length = 374
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +2
Query: 197 KPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQASGRITK 376
K EE++++ E+GIK NE+A E + L+ + L ID E + +T+
Sbjct: 276 KVEEIEESVEKGIKTNEEATETVSILVDGLEDRIKNMLKLVDNAIDHEDNEAATRIVLTQ 335
Query: 377 DSKYVD 394
SK V+
Sbjct: 336 ISKKVE 341
>At3g28270.1 68416.m03530 expressed protein similar to At14a protein
(GI:11994571 and GI:11994573) [Arabidopsis thaliana]
Length = 374
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +2
Query: 197 KPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQASGRITK 376
K EE++++ E+GIK NE+A E + L+ + L ID E + +T+
Sbjct: 276 KVEEIEESVEKGIKTNEEATETVSILVDGLEDRIKNMLKLVDNAIDHEDNEAATRIVLTQ 335
Query: 377 DSKYVD 394
SK V+
Sbjct: 336 ISKKVE 341
>At5g64390.2 68418.m08088 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 824
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 470 VGKLLGPKGNTMKQLQEDTLCKMAV 544
VG ++G GN +KQLQ+ T K+ V
Sbjct: 58 VGAVIGKSGNVIKQLQQSTGAKIRV 82
>At5g64390.1 68418.m08089 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 857
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 470 VGKLLGPKGNTMKQLQEDTLCKMAV 544
VG ++G GN +KQLQ+ T K+ V
Sbjct: 58 VGAVIGKSGNVIKQLQQSTGAKIRV 82
>At5g52280.1 68418.m06488 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 853
Score = 28.3 bits (60), Expect = 6.9
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Frame = +2
Query: 122 LIKMADKYDKN-GYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLN 298
L++ A K +++ G +SG+ + +T + + E+LD + K NE+ + EL E L
Sbjct: 406 LLEEAKKLEEHKGMDSGNNEIDTLKQQIEDLDWELDSYKKKNEEQEILLDELTQEYESLK 465
Query: 299 NSKFP-LSMKLIDQEVTKVQASGRITKD 379
+ +S KL QE + + +KD
Sbjct: 466 EENYKNVSSKLEQQECSNAEDEYLDSKD 493
>At5g16720.1 68418.m01958 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 675
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 146 DKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSE 283
D+ Y G F+ +GK ++ QNGE I E G +RE+ E
Sbjct: 178 DRESYPLGFFRDKAEEGKKQDQQQNGEV-ISDVESYGLSLREVSEE 222
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,137,022
Number of Sequences: 28952
Number of extensions: 289005
Number of successful extensions: 760
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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