SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O07
         (858 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56140.1 68418.m07003 KH domain-containing protein                  58   1e-08
At3g08620.1 68416.m01001 KH domain-containing protein                  58   1e-08
At2g38610.2 68415.m04743 KH domain-containing protein                  58   1e-08
At2g38610.1 68415.m04742 KH domain-containing protein                  58   1e-08
At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus...    57   2e-08
At1g09660.2 68414.m01085 KH domain-containing quaking protein, p...    55   5e-08
At1g09660.1 68414.m01084 KH domain-containing quaking protein, p...    55   5e-08
At5g51300.2 68418.m06360 splicing factor-related contains simila...    48   6e-06
At5g51300.1 68418.m06359 splicing factor-related contains simila...    48   6e-06
At3g32940.1 68416.m04174 expressed protein                             33   0.18 
At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to SW...    31   0.98 
At1g22400.1 68414.m02801 UDP-glucoronosyl/UDP-glucosyl transfera...    31   0.98 
At3g04610.1 68416.m00493 KH domain-containing protein similar pu...    30   2.3  
At1g22380.1 68414.m02799 UDP-glucoronosyl/UDP-glucosyl transfera...    29   3.0  
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E...    29   4.0  
At3g28270.2 68416.m03531 expressed protein similar to At14a prot...    29   4.0  
At3g28270.1 68416.m03530 expressed protein similar to At14a prot...    29   4.0  
At5g64390.2 68418.m08088 KH domain-containing RNA-binding protei...    29   5.2  
At5g64390.1 68418.m08089 KH domain-containing RNA-binding protei...    29   5.2  
At5g52280.1 68418.m06488 protein transport protein-related low s...    28   6.9  
At5g16720.1 68418.m01958 expressed protein contains Pfam profile...    28   6.9  

>At5g56140.1 68418.m07003 KH domain-containing protein 
          Length = 315

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 22/43 (51%), Positives = 35/43 (81%)
 Frame = +2

Query: 452 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580
           +P FNFVG+LLGP+GN++K+++  T C++ + GRGS++D  KE
Sbjct: 177 YPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKE 219


>At3g08620.1 68416.m01001 KH domain-containing protein 
          Length = 283

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 21/43 (48%), Positives = 36/43 (83%)
 Frame = +2

Query: 452 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580
           +P FNFVG+LLGP+GN++K+++  T C++ + G+GS++D +KE
Sbjct: 146 YPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKE 188


>At2g38610.2 68415.m04743 KH domain-containing protein
          Length = 286

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 21/43 (48%), Positives = 36/43 (83%)
 Frame = +2

Query: 452 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580
           +P FNFVG+LLGP+GN++K+++  T C++ + G+GS++D +KE
Sbjct: 147 YPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKE 189


>At2g38610.1 68415.m04742 KH domain-containing protein
          Length = 286

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 21/43 (48%), Positives = 36/43 (83%)
 Frame = +2

Query: 452 HPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580
           +P FNFVG+LLGP+GN++K+++  T C++ + G+GS++D +KE
Sbjct: 147 YPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKE 189


>At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus
           musculus
          Length = 555

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 21/44 (47%), Positives = 36/44 (81%)
 Frame = +2

Query: 449 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580
           ++P +NFVG+LLGP+GN++K+++  T C++ + GRGS++D  KE
Sbjct: 417 KYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKE 460


>At1g09660.2 68414.m01085 KH domain-containing quaking protein,
           putative similar to GB:AAC67357
          Length = 264

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 20/44 (45%), Positives = 36/44 (81%)
 Frame = +2

Query: 449 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580
           ++P +NFVG++LGP+GN++K+++  T C++ + GRGS++D  KE
Sbjct: 157 KYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKE 200


>At1g09660.1 68414.m01084 KH domain-containing quaking protein,
           putative similar to GB:AAC67357
          Length = 298

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 20/44 (45%), Positives = 36/44 (81%)
 Frame = +2

Query: 449 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQKE 580
           ++P +NFVG++LGP+GN++K+++  T C++ + GRGS++D  KE
Sbjct: 157 KYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKE 200


>At5g51300.2 68418.m06360 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 16/40 (40%), Positives = 31/40 (77%)
 Frame = +2

Query: 449 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 568
           E P +NF+G ++GP+GNT K+++ +T  K+ + G+GS+++
Sbjct: 251 EFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKE 290


>At5g51300.1 68418.m06359 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 16/40 (40%), Positives = 31/40 (77%)
 Frame = +2

Query: 449 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 568
           E P +NF+G ++GP+GNT K+++ +T  K+ + G+GS+++
Sbjct: 251 EFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKE 290


>At3g32940.1 68416.m04174 expressed protein
          Length = 607

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +2

Query: 449 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLG 550
           EH  F+F+  + G +G+T K+L+++T  K+ + G
Sbjct: 143 EHSDFSFLSLIFGSQGDTQKRLEKETGAKVQIFG 176


>At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to
           SWISS-PROT:P48731 homeobox protein ATH1. [Arabidopsis
           thaliana]
          Length = 473

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 547 RQGLNERQAKRXRLRQSLDPKYSHLADDLHVEISAIAPPAE 669
           R+ L  ++     L Q +D +YSH  D++H  ISA     E
Sbjct: 267 RRALEAKKTHLLDLLQMVDDRYSHCVDEIHTVISAFHAATE 307


>At1g22400.1 68414.m02801 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 489

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = +2

Query: 137 DKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEK 286
           D++D      GD KR   +    EL  +GE+G K+ EKA E+ R  L+EK
Sbjct: 415 DEWDVGIEIGGDVKREEVEAVVREL-MDGEKGKKMREKAVEWQR--LAEK 461


>At3g04610.1 68416.m00493 KH domain-containing protein similar
           putative nucleic acid binding protein GB:CAB39665
           [Arabidopsis thaliana]; Pfam HMM hit: KH domain family
           of RNA binding proteins
          Length = 577

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 473 GKLLGPKGNTMKQLQEDTLCKMAVLG 550
           G L+G +G T+K +QE + C + VLG
Sbjct: 289 GSLIGKQGGTVKAIQEASACIVRVLG 314


>At1g22380.1 68414.m02799 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 467

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/58 (37%), Positives = 31/58 (53%)
 Frame = +2

Query: 167 GDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQE 340
           GD KR   +    EL  +GE+G K+ EKA E+ R  L+EK     +K P    +I+ E
Sbjct: 403 GDVKRGEVEAVVREL-MDGEKGKKMREKAVEWRR--LAEKA----TKLPCGSSVINFE 453


>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
           EF-1-alpha, putative contains similarity to
           SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
           [Aeropyrum pernix]
          Length = 667

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +3

Query: 375 RTQNMWMCSVTNQPKSQLKFLCQLRNILNSTLWENY*VQKET 500
           +TQ +W C++      +  F+C +  +L   +  N  + K T
Sbjct: 47  KTQGLWRCAICTYDNVETMFVCDICGVLRHPVAGNQSINKNT 88


>At3g28270.2 68416.m03531 expressed protein similar to At14a protein
           (GI:11994571 and GI:11994573) [Arabidopsis thaliana]
          Length = 374

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = +2

Query: 197 KPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQASGRITK 376
           K EE++++ E+GIK NE+A E +  L+        +   L    ID E  +      +T+
Sbjct: 276 KVEEIEESVEKGIKTNEEATETVSILVDGLEDRIKNMLKLVDNAIDHEDNEAATRIVLTQ 335

Query: 377 DSKYVD 394
            SK V+
Sbjct: 336 ISKKVE 341


>At3g28270.1 68416.m03530 expressed protein similar to At14a protein
           (GI:11994571 and GI:11994573) [Arabidopsis thaliana]
          Length = 374

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = +2

Query: 197 KPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQASGRITK 376
           K EE++++ E+GIK NE+A E +  L+        +   L    ID E  +      +T+
Sbjct: 276 KVEEIEESVEKGIKTNEEATETVSILVDGLEDRIKNMLKLVDNAIDHEDNEAATRIVLTQ 335

Query: 377 DSKYVD 394
            SK V+
Sbjct: 336 ISKKVE 341


>At5g64390.2 68418.m08088 KH domain-containing RNA-binding protein
           (HEN4) contains similarity to RNA-binding protein;
           identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
           contains Pfam domain PF00013: KH domain; identical to
           cDNA HEN4 (HEN4) GI:28261402
          Length = 824

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 470 VGKLLGPKGNTMKQLQEDTLCKMAV 544
           VG ++G  GN +KQLQ+ T  K+ V
Sbjct: 58  VGAVIGKSGNVIKQLQQSTGAKIRV 82


>At5g64390.1 68418.m08089 KH domain-containing RNA-binding protein
           (HEN4) contains similarity to RNA-binding protein;
           identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
           contains Pfam domain PF00013: KH domain; identical to
           cDNA HEN4 (HEN4) GI:28261402
          Length = 857

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 470 VGKLLGPKGNTMKQLQEDTLCKMAV 544
           VG ++G  GN +KQLQ+ T  K+ V
Sbjct: 58  VGAVIGKSGNVIKQLQQSTGAKIRV 82


>At5g52280.1 68418.m06488 protein transport protein-related low
           similarity to  SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 853

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
 Frame = +2

Query: 122 LIKMADKYDKN-GYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLN 298
           L++ A K +++ G +SG+ + +T + + E+LD   +   K NE+    + EL  E   L 
Sbjct: 406 LLEEAKKLEEHKGMDSGNNEIDTLKQQIEDLDWELDSYKKKNEEQEILLDELTQEYESLK 465

Query: 299 NSKFP-LSMKLIDQEVTKVQASGRITKD 379
              +  +S KL  QE +  +     +KD
Sbjct: 466 EENYKNVSSKLEQQECSNAEDEYLDSKD 493


>At5g16720.1 68418.m01958 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 675

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 146 DKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSE 283
           D+  Y  G F+    +GK ++  QNGE  I   E  G  +RE+  E
Sbjct: 178 DRESYPLGFFRDKAEEGKKQDQQQNGEV-ISDVESYGLSLREVSEE 222


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,137,022
Number of Sequences: 28952
Number of extensions: 289005
Number of successful extensions: 760
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -