Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_O06
         (859 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   257   6e-69
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiestera...    31   1.4  
U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiestera...    31   1.4  
U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiestera...    31   1.4  
U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiestera...    31   1.4  
U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiestera...    31   1.4  
U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiestera...    31   1.4  
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    29   5.6  
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    29   5.6  
AL032630-4|CAA21561.1|  212|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  257 bits (630), Expect = 6e-69
 Identities = 120/209 (57%), Positives = 150/209 (71%)
 Frame = +3

Query: 177 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 356
           LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGG
Sbjct: 23  LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGG 82

Query: 357 THRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 536
           THRSGQGAFGNMCRGG MFAP K +RRWH                         QARGH+
Sbjct: 83  THRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHV 142

Query: 537 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQ 716
           I+++ E+PLVV+DKV+   KTK+AV+FLRR   W+DI KVY S+R RAGKGK+RNR+  Q
Sbjct: 143 IDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQ 202

Query: 717 RKGPLIIFNKDQGLTRAFRNIPGVELLNV 803
           + GP++I+ +D    RAFRNIPGV+++NV
Sbjct: 203 KLGPVVIYGQDAECARAFRNIPGVDVMNV 231



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 113 ARPLVSVYSEKSETVQGCSQAPPV 184
           ARPLV+VY EK E  Q   + P V
Sbjct: 3   ARPLVTVYDEKYEATQSQIRLPAV 26


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +3

Query: 246 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 416
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 417 PTKP 428
             KP
Sbjct: 197 APKP 200


>U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforma protein.
          Length = 549

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 89  SSEMSLSVARPLVSVYSEKSETVQGCSQAPPVRIQGAHTSGP 214
           SS+    V++ L++ Y +K E         P  +QG  TSGP
Sbjct: 131 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 172


>U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformd protein.
          Length = 674

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 89  SSEMSLSVARPLVSVYSEKSETVQGCSQAPPVRIQGAHTSGP 214
           SS+    V++ L++ Y +K E         P  +QG  TSGP
Sbjct: 256 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 297


>U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformc protein.
          Length = 599

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 89  SSEMSLSVARPLVSVYSEKSETVQGCSQAPPVRIQGAHTSGP 214
           SS+    V++ L++ Y +K E         P  +QG  TSGP
Sbjct: 181 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 222


>U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforme protein.
          Length = 612

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 89  SSEMSLSVARPLVSVYSEKSETVQGCSQAPPVRIQGAHTSGP 214
           SS+    V++ L++ Y +K E         P  +QG  TSGP
Sbjct: 194 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 235


>U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformb protein.
          Length = 626

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 89  SSEMSLSVARPLVSVYSEKSETVQGCSQAPPVRIQGAHTSGP 214
           SS+    V++ L++ Y +K E         P  +QG  TSGP
Sbjct: 208 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 249


>U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformg protein.
          Length = 673

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 89  SSEMSLSVARPLVSVYSEKSETVQGCSQAPPVRIQGAHTSGP 214
           SS+    V++ L++ Y +K E         P  +QG  TSGP
Sbjct: 255 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 296


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -3

Query: 716 LDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 564
           L+  +VA   L  TKT+RL+ +  IRP      + + L  + + L+ +GYN
Sbjct: 265 LNIESVAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 567 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 743
           V   V E+ KTK  VI  + LKA ++ +K  K + R++A K  M     +    P   F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472

Query: 744 KD 749
           KD
Sbjct: 473 KD 474


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 567 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 743
           V   V E+ KTK  VI  + LKA ++ +K  K + R++A K  M     +    P   F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472

Query: 744 KD 749
           KD
Sbjct: 473 KD 474


>AL032630-4|CAA21561.1|  212|Caenorhabditis elegans Hypothetical
           protein Y62H9A.4 protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 692 NAQPSSYPA*GTPHNLQQGSGSDSRFPQHPGCGAPE 799
           N   +S  +  + + L+  S SD R+P++PG  AP+
Sbjct: 36  NRYSTSDSSDSSENELKSRSNSDERYPEYPGVYAPQ 71


>AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical
           protein T28C12.3 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -3

Query: 800 IQELHTR--DVAESASQTLILVEDYEGSLTLDTTTVAHFTL 684
           ++ LH    +  E + + L++++ +E + TL  TTVA+F+L
Sbjct: 291 LESLHIEILEFDEDSVKELVILDQWEEAKTLSLTTVAYFSL 331


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 572 GYNQGKLGNL-FNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAP 432
           GY  G + N+  N VS+ + + ++AS+S G   G S  +E+D   P P
Sbjct: 614 GYT-GCIKNIRMNGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,621,082
Number of Sequences: 27780
Number of extensions: 427409
Number of successful extensions: 1327
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)